Hb_000614_240

Information

Type -
Description -
Location Contig614: 147351-150982
Sequence    

Annotation

kegg
ID rcu:RCOM_1081350
description Signal recognition particle subunit srp72, putative
nr
ID XP_012085604.1
description PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
swissprot
ID O76094
description Signal recognition particle subunit SRP72 OS=Homo sapiens GN=SRP72 PE=1 SV=3
trembl
ID A0A067JVD9
description Signal recognition particle subunit SRP72 OS=Jatropha curcas GN=JCGZ_17906 PE=3 SV=1
Gene Ontology
ID GO:0005786
description signal recognition particle subunit srp72

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51152: 147436-150934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000614_240 0.0 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
2 Hb_001999_310 0.0537482387 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
3 Hb_010142_020 0.0547756097 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000111_290 0.0550769353 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
5 Hb_011016_050 0.0551060549 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
6 Hb_000011_060 0.0552273781 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
7 Hb_002456_010 0.0586366496 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
8 Hb_001105_020 0.0615176448 - - expressed protein, putative [Ricinus communis]
9 Hb_009296_040 0.0630333699 - - hypothetical protein L484_007435 [Morus notabilis]
10 Hb_001417_030 0.0638673624 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_002026_150 0.0699099769 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
12 Hb_000069_120 0.0701370527 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
13 Hb_002169_050 0.0703081747 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
14 Hb_001500_140 0.0706052023 - - pelota, putative [Ricinus communis]
15 Hb_000537_050 0.0706179909 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
16 Hb_005663_110 0.0718627382 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
17 Hb_010863_010 0.0725177938 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
18 Hb_002908_050 0.0726978168 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
19 Hb_000984_170 0.0746025989 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
20 Hb_003913_070 0.075242837 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]

Gene co-expression network

sample Hb_000614_240 Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_001876_050 Hb_001876_050 Hb_001999_310--Hb_001876_050 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_004324_130 Hb_004324_130 Hb_000111_290--Hb_004324_130 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000111_290--Hb_001999_310 Hb_000140_210 Hb_000140_210 Hb_011016_050--Hb_000140_210 Hb_009296_040 Hb_009296_040 Hb_011016_050--Hb_009296_040 Hb_004030_080 Hb_004030_080 Hb_011016_050--Hb_004030_080 Hb_011016_050--Hb_010142_020 Hb_000083_120 Hb_000083_120 Hb_011016_050--Hb_000083_120 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_013726_090 Hb_013726_090 Hb_000011_060--Hb_013726_090 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_002456_010--Hb_001876_050 Hb_002456_010--Hb_004324_130 Hb_003544_060 Hb_003544_060 Hb_002456_010--Hb_003544_060 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5585 13.4473 9.41057 15.1517 10.5164 11.5827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1586 10.4372 14.801 23.2812 14.7201

CAGE analysis