Hb_011016_050

Information

Type -
Description -
Location Contig11016: 25410-43255
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06050g
description hypothetical protein
nr
ID XP_012066174.1
description PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
swissprot
ID Q84RR0
description Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1
trembl
ID A0A067LFF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23756 PE=4 SV=1
Gene Ontology
ID GO:0003676
description probable e3 ubiquitin-protein ligase ari7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03113: 27389-28000 , PASA_asmbl_03114: 25369-43239 , PASA_asmbl_03115: 27016-27317 , PASA_asmbl_03116: 34350-34481 , PASA_asmbl_03117: 31551-32074 , PASA_asmbl_03118: 26350-26497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011016_050 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
2 Hb_000614_240 0.0551060549 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
3 Hb_000140_210 0.0560957757 - - sec10, putative [Ricinus communis]
4 Hb_009296_040 0.0562114521 - - hypothetical protein L484_007435 [Morus notabilis]
5 Hb_004030_080 0.0603223431 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
6 Hb_010142_020 0.0611487319 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000083_120 0.0647248271 - - transcription factor, putative [Ricinus communis]
8 Hb_000111_290 0.0662934191 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
9 Hb_001434_080 0.0664347024 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
10 Hb_000537_050 0.0671901013 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
11 Hb_001500_140 0.0682232397 - - pelota, putative [Ricinus communis]
12 Hb_000069_120 0.0738492741 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
13 Hb_000011_060 0.0744297799 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
14 Hb_000230_260 0.0754286747 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
15 Hb_005663_110 0.0755237964 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
16 Hb_000107_490 0.0757627292 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_001679_050 0.0773602716 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
18 Hb_000072_120 0.0778726718 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_003544_050 0.0779685639 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
20 Hb_001500_100 0.0785368447 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011016_050 Hb_011016_050 Hb_000614_240 Hb_000614_240 Hb_011016_050--Hb_000614_240 Hb_000140_210 Hb_000140_210 Hb_011016_050--Hb_000140_210 Hb_009296_040 Hb_009296_040 Hb_011016_050--Hb_009296_040 Hb_004030_080 Hb_004030_080 Hb_011016_050--Hb_004030_080 Hb_010142_020 Hb_010142_020 Hb_011016_050--Hb_010142_020 Hb_000083_120 Hb_000083_120 Hb_011016_050--Hb_000083_120 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_000614_240--Hb_010142_020 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010 Hb_003544_050 Hb_003544_050 Hb_000140_210--Hb_003544_050 Hb_000140_210--Hb_009296_040 Hb_000066_170 Hb_000066_170 Hb_000140_210--Hb_000066_170 Hb_085781_020 Hb_085781_020 Hb_000140_210--Hb_085781_020 Hb_000028_390 Hb_000028_390 Hb_000140_210--Hb_000028_390 Hb_009296_040--Hb_010142_020 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_009296_040--Hb_000614_240 Hb_002830_010 Hb_002830_010 Hb_004030_080--Hb_002830_010 Hb_000984_170 Hb_000984_170 Hb_004030_080--Hb_000984_170 Hb_005582_040 Hb_005582_040 Hb_004030_080--Hb_005582_040 Hb_006452_120 Hb_006452_120 Hb_004030_080--Hb_006452_120 Hb_000028_130 Hb_000028_130 Hb_004030_080--Hb_000028_130 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_000923_010 Hb_000923_010 Hb_000083_120--Hb_000923_010 Hb_005765_010 Hb_005765_010 Hb_000083_120--Hb_005765_010 Hb_000083_120--Hb_000111_290 Hb_004324_130 Hb_004324_130 Hb_000083_120--Hb_004324_130 Hb_000083_120--Hb_001500_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4473 27.8585 17.0493 32.315 18.3597 25.7111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0662 17.6145 30.478 36.9786 23.0031

CAGE analysis