Hb_000066_170

Information

Type -
Description -
Location Contig66: 258129-272365
Sequence    

Annotation

kegg
ID rcu:RCOM_0155820
description phosphoprotein phosphatase, putative
nr
ID XP_012090080.1
description PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]
swissprot
ID F4J3T8
description Phosphatidylinositol-3-phosphatase myotubularin-1 OS=Arabidopsis thaliana GN=MTM1 PE=1 SV=1
trembl
ID A0A067L9E2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01537 PE=4 SV=1
Gene Ontology
ID GO:0004725
description phosphatidylinositol-3-phosphatase myotubularin-1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52929: 259338-261325 , PASA_asmbl_52930: 264141-268292 , PASA_asmbl_52931: 268118-280450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000066_170 0.0 - - PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]
2 Hb_001440_030 0.0624034174 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
3 Hb_000140_210 0.0633223579 - - sec10, putative [Ricinus communis]
4 Hb_085781_020 0.0674078355 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
5 Hb_000592_030 0.07727606 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
6 Hb_000537_050 0.0794996605 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
7 Hb_009296_040 0.0861994838 - - hypothetical protein L484_007435 [Morus notabilis]
8 Hb_000028_390 0.0870836084 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
9 Hb_003544_050 0.0874242627 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
10 Hb_003411_040 0.0875271272 - - unnamed protein product [Coffea canephora]
11 Hb_019337_020 0.0883014059 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
12 Hb_000261_480 0.0883602974 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
13 Hb_000352_340 0.0887982152 - - PREDICTED: importin-13 [Jatropha curcas]
14 Hb_000069_120 0.0907935273 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
15 Hb_041327_010 0.0919387405 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
16 Hb_011016_050 0.0939035199 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
17 Hb_000872_010 0.0943608526 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
18 Hb_002639_080 0.0948240582 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
19 Hb_071130_010 0.0950228106 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
20 Hb_003060_060 0.0954594679 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_000066_170 Hb_000066_170 Hb_001440_030 Hb_001440_030 Hb_000066_170--Hb_001440_030 Hb_000140_210 Hb_000140_210 Hb_000066_170--Hb_000140_210 Hb_085781_020 Hb_085781_020 Hb_000066_170--Hb_085781_020 Hb_000592_030 Hb_000592_030 Hb_000066_170--Hb_000592_030 Hb_000537_050 Hb_000537_050 Hb_000066_170--Hb_000537_050 Hb_009296_040 Hb_009296_040 Hb_000066_170--Hb_009296_040 Hb_000261_480 Hb_000261_480 Hb_001440_030--Hb_000261_480 Hb_000872_010 Hb_000872_010 Hb_001440_030--Hb_000872_010 Hb_000352_340 Hb_000352_340 Hb_001440_030--Hb_000352_340 Hb_001876_010 Hb_001876_010 Hb_001440_030--Hb_001876_010 Hb_001440_030--Hb_009296_040 Hb_003544_050 Hb_003544_050 Hb_000140_210--Hb_003544_050 Hb_000140_210--Hb_009296_040 Hb_011016_050 Hb_011016_050 Hb_000140_210--Hb_011016_050 Hb_000140_210--Hb_085781_020 Hb_000028_390 Hb_000028_390 Hb_000140_210--Hb_000028_390 Hb_071130_010 Hb_071130_010 Hb_085781_020--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_085781_020--Hb_000230_260 Hb_003060_060 Hb_003060_060 Hb_085781_020--Hb_003060_060 Hb_002639_080 Hb_002639_080 Hb_085781_020--Hb_002639_080 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_000592_030--Hb_000537_050 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_004586_220 Hb_004586_220 Hb_000537_050--Hb_004586_220 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_000537_050--Hb_009296_040 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_009296_040--Hb_000028_390 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95393 3.76881 2.86536 3.9865 2.93307 5.84773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64616 2.16057 4.68099 6.88282 4.51184

CAGE analysis