Hb_000537_050

Information

Type -
Description -
Location Contig537: 110120-128675
Sequence    

Annotation

kegg
ID rcu:RCOM_0803100
description AP-2 complex subunit beta-1, putative
nr
ID XP_002516577.1
description AP-2 complex subunit beta-1, putative [Ricinus communis]
swissprot
ID Q9LDK9
description Beta-adaptin-like protein A OS=Arabidopsis thaliana GN=BETAA-AD PE=1 SV=1
trembl
ID B9RS58
description Beta-adaptin-like protein OS=Ricinus communis GN=RCOM_0803100 PE=3 SV=1
Gene Ontology
ID GO:0030131
description beta-adaptin-like protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47593: 110405-128308 , PASA_asmbl_47595: 128328-128857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000537_050 0.0 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
2 Hb_004586_220 0.0464386167 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
3 Hb_000592_030 0.0559860902 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
4 Hb_020378_030 0.0571476212 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
5 Hb_012092_060 0.0598848986 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
6 Hb_009296_040 0.0618094499 - - hypothetical protein L484_007435 [Morus notabilis]
7 Hb_002890_130 0.0632663202 - - tip120, putative [Ricinus communis]
8 Hb_000590_050 0.0642732465 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
9 Hb_000069_120 0.0649355013 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
10 Hb_001814_030 0.0649632782 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
11 Hb_041327_010 0.0654627145 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
12 Hb_000011_060 0.0655342711 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
13 Hb_000003_100 0.0662632147 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
14 Hb_001377_350 0.0667366177 - - PREDICTED: exportin-2 [Jatropha curcas]
15 Hb_004030_080 0.0670651404 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
16 Hb_011016_050 0.0671901013 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
17 Hb_000261_480 0.0673702616 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
18 Hb_012286_040 0.0687075403 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
19 Hb_000140_210 0.0697726882 - - sec10, putative [Ricinus communis]
20 Hb_000789_250 0.0699545509 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]

Gene co-expression network

sample Hb_000537_050 Hb_000537_050 Hb_004586_220 Hb_004586_220 Hb_000537_050--Hb_004586_220 Hb_000592_030 Hb_000592_030 Hb_000537_050--Hb_000592_030 Hb_020378_030 Hb_020378_030 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130 Hb_004586_220--Hb_020378_030 Hb_001814_030 Hb_001814_030 Hb_004586_220--Hb_001814_030 Hb_000170_090 Hb_000170_090 Hb_004586_220--Hb_000170_090 Hb_000138_100 Hb_000138_100 Hb_004586_220--Hb_000138_100 Hb_000441_220 Hb_000441_220 Hb_004586_220--Hb_000441_220 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_000592_030--Hb_020378_030 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_000590_050 Hb_000590_050 Hb_020378_030--Hb_000590_050 Hb_020378_030--Hb_000441_220 Hb_020378_030--Hb_001814_030 Hb_002732_040 Hb_002732_040 Hb_020378_030--Hb_002732_040 Hb_003912_070 Hb_003912_070 Hb_012092_060--Hb_003912_070 Hb_005568_040 Hb_005568_040 Hb_012092_060--Hb_005568_040 Hb_012286_040 Hb_012286_040 Hb_012092_060--Hb_012286_040 Hb_000003_100 Hb_000003_100 Hb_012092_060--Hb_000003_100 Hb_011287_050 Hb_011287_050 Hb_012092_060--Hb_011287_050 Hb_000140_210 Hb_000140_210 Hb_009296_040--Hb_000140_210 Hb_011016_050 Hb_011016_050 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_000028_390 Hb_000028_390 Hb_009296_040--Hb_000028_390 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240 Hb_011819_020 Hb_011819_020 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_000317_100 Hb_000317_100 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.19983 14.461 9.03651 13.3977 9.98321 13.8375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.17715 6.39368 11.8435 17.7576 14.7263

CAGE analysis