Hb_002411_110

Information

Type -
Description -
Location Contig2411: 92703-117533
Sequence    

Annotation

kegg
ID rcu:RCOM_0620590
description DNA-directed RNA polymerase III subunit, putative
nr
ID XP_012068721.1
description PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
swissprot
ID P59470
description DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=2 SV=2
trembl
ID A0A067KWI0
description DNA-directed RNA polymerase OS=Jatropha curcas GN=JCGZ_24565 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase iii subunit rpc2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25264: 92735-94148 , PASA_asmbl_25265: 95212-98251 , PASA_asmbl_25266: 98927-108280 , PASA_asmbl_25268: 113119-117472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_110 0.0 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
2 Hb_002890_130 0.0420732874 - - tip120, putative [Ricinus communis]
3 Hb_001925_060 0.0486791108 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
4 Hb_008948_020 0.0560331809 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
5 Hb_000317_100 0.0563933768 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
6 Hb_011819_020 0.0607865215 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
7 Hb_033312_040 0.062258088 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
8 Hb_004208_050 0.0641702325 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
9 Hb_002071_070 0.0663904074 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
10 Hb_004030_080 0.0664243025 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
11 Hb_002749_060 0.0667995669 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
12 Hb_000773_040 0.066870207 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
13 Hb_012286_040 0.0669731792 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
14 Hb_027506_010 0.067149656 - - PREDICTED: cullin-4 [Jatropha curcas]
15 Hb_004586_220 0.0672786906 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
16 Hb_000003_100 0.0673674292 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
17 Hb_000261_480 0.0678636485 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
18 Hb_011231_020 0.0689577767 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
19 Hb_001481_060 0.0692370834 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
20 Hb_000409_050 0.0698922631 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]

Gene co-expression network

sample Hb_002411_110 Hb_002411_110 Hb_002890_130 Hb_002890_130 Hb_002411_110--Hb_002890_130 Hb_001925_060 Hb_001925_060 Hb_002411_110--Hb_001925_060 Hb_008948_020 Hb_008948_020 Hb_002411_110--Hb_008948_020 Hb_000317_100 Hb_000317_100 Hb_002411_110--Hb_000317_100 Hb_011819_020 Hb_011819_020 Hb_002411_110--Hb_011819_020 Hb_033312_040 Hb_033312_040 Hb_002411_110--Hb_033312_040 Hb_002890_130--Hb_011819_020 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_003040_050 Hb_003040_050 Hb_001925_060--Hb_003040_050 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_011174_020 Hb_011174_020 Hb_001925_060--Hb_011174_020 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040 Hb_008948_020--Hb_007413_010 Hb_001716_040 Hb_001716_040 Hb_008948_020--Hb_001716_040 Hb_006913_020 Hb_006913_020 Hb_008948_020--Hb_006913_020 Hb_004435_030 Hb_004435_030 Hb_008948_020--Hb_004435_030 Hb_005582_040 Hb_005582_040 Hb_008948_020--Hb_005582_040 Hb_000317_100--Hb_005215_010 Hb_000317_100--Hb_011819_020 Hb_000317_100--Hb_003040_050 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_011819_020--Hb_000261_480 Hb_002749_060 Hb_002749_060 Hb_011819_020--Hb_002749_060 Hb_003280_020 Hb_003280_020 Hb_011819_020--Hb_003280_020 Hb_011819_020--Hb_005215_010 Hb_006189_020 Hb_006189_020 Hb_033312_040--Hb_006189_020 Hb_000510_360 Hb_000510_360 Hb_033312_040--Hb_000510_360 Hb_001481_060 Hb_001481_060 Hb_033312_040--Hb_001481_060 Hb_000139_080 Hb_000139_080 Hb_033312_040--Hb_000139_080 Hb_004333_040 Hb_004333_040 Hb_033312_040--Hb_004333_040 Hb_003098_070 Hb_003098_070 Hb_033312_040--Hb_003098_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83769 8.17514 6.71135 6.71108 4.74025 6.29825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.79111 4.89054 5.45368 8.87583 8.4647

CAGE analysis