Hb_000795_040

Information

Type -
Description -
Location Contig795: 149966-166410
Sequence    

Annotation

kegg
ID rcu:RCOM_1065770
description androgen induced inhibitor of proliferation (as3) / pds5, putative
nr
ID XP_012074803.1
description PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
swissprot
ID Q5U241
description Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2
trembl
ID A0A067KKH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08956 PE=4 SV=1
Gene Ontology
ID GO:0005634
description androgen induced inhibitor of proliferation

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58495: 150103-152914 , PASA_asmbl_58496: 155419-156760 , PASA_asmbl_58497: 158715-161193 , PASA_asmbl_58498: 161841-164907 , PASA_asmbl_58499: 164908-166234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000795_040 0.0 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
2 Hb_000085_210 0.0503472261 - - DNA topoisomerase type I, putative [Ricinus communis]
3 Hb_002581_010 0.0571986333 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
4 Hb_011174_020 0.060133997 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
5 Hb_017469_110 0.0607234657 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
6 Hb_001925_060 0.0630811266 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
7 Hb_000879_040 0.0660874549 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
8 Hb_001008_070 0.0664222352 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
9 Hb_000676_330 0.0676559883 - - protein with unknown function [Ricinus communis]
10 Hb_001377_190 0.0685247454 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
11 Hb_005288_070 0.0698054694 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
12 Hb_000749_010 0.0703225903 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
13 Hb_033312_130 0.0715405188 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
14 Hb_007955_050 0.072638113 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
15 Hb_000996_020 0.0726626891 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
16 Hb_005276_200 0.0734538685 - - PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Jatropha curcas]
17 Hb_000934_210 0.0752971885 - - suppressor of ty, putative [Ricinus communis]
18 Hb_001157_160 0.0759036432 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
19 Hb_007044_110 0.0760270878 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_027472_220 0.0761053553 - - PREDICTED: nucleolar complex protein 3 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000795_040 Hb_000795_040 Hb_000085_210 Hb_000085_210 Hb_000795_040--Hb_000085_210 Hb_002581_010 Hb_002581_010 Hb_000795_040--Hb_002581_010 Hb_011174_020 Hb_011174_020 Hb_000795_040--Hb_011174_020 Hb_017469_110 Hb_017469_110 Hb_000795_040--Hb_017469_110 Hb_001925_060 Hb_001925_060 Hb_000795_040--Hb_001925_060 Hb_000879_040 Hb_000879_040 Hb_000795_040--Hb_000879_040 Hb_000111_170 Hb_000111_170 Hb_000085_210--Hb_000111_170 Hb_005288_070 Hb_005288_070 Hb_000085_210--Hb_005288_070 Hb_000676_330 Hb_000676_330 Hb_000085_210--Hb_000676_330 Hb_000085_210--Hb_017469_110 Hb_001439_220 Hb_001439_220 Hb_000085_210--Hb_001439_220 Hb_001008_070 Hb_001008_070 Hb_002581_010--Hb_001008_070 Hb_003117_030 Hb_003117_030 Hb_002581_010--Hb_003117_030 Hb_002581_010--Hb_017469_110 Hb_000599_270 Hb_000599_270 Hb_002581_010--Hb_000599_270 Hb_007413_010 Hb_007413_010 Hb_002581_010--Hb_007413_010 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_003040_050 Hb_003040_050 Hb_011174_020--Hb_003040_050 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_011174_020--Hb_001925_060 Hb_011174_020--Hb_017469_110 Hb_013459_020 Hb_013459_020 Hb_017469_110--Hb_013459_020 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_017469_110--Hb_001008_070 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_001925_060--Hb_003040_050 Hb_001925_060--Hb_007413_010 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100 Hb_001318_070 Hb_001318_070 Hb_000879_040--Hb_001318_070 Hb_000243_210 Hb_000243_210 Hb_000879_040--Hb_000243_210 Hb_012055_110 Hb_012055_110 Hb_000879_040--Hb_012055_110 Hb_000027_050 Hb_000027_050 Hb_000879_040--Hb_000027_050 Hb_000099_040 Hb_000099_040 Hb_000879_040--Hb_000099_040 Hb_001430_080 Hb_001430_080 Hb_000879_040--Hb_001430_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.94048 16.351 12.4769 8.75805 9.16867 9.49361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.71652 8.64874 5.8257 12.7877 17.0096

CAGE analysis