Hb_005288_070

Information

Type transcription factor
Description TF Family: G2-like
Location Contig5288: 38929-45029
Sequence    

Annotation

kegg
ID rcu:RCOM_0609760
description DNA binding protein, putative
nr
ID XP_002521993.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID B9S7M4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0609760 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein phr1-like 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47164: 38956-45065 , PASA_asmbl_47165: 38990-44944 , PASA_asmbl_47166: 42303-42454 , PASA_asmbl_47167: 42459-42597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005288_070 0.0 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
2 Hb_007283_010 0.0499435437 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
3 Hb_030414_040 0.0574629798 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
4 Hb_007044_110 0.0628131284 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000205_260 0.0632257068 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
6 Hb_000457_230 0.0641976875 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
7 Hb_000111_170 0.0661241281 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
8 Hb_008059_010 0.0669777899 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
9 Hb_000085_210 0.0677548451 - - DNA topoisomerase type I, putative [Ricinus communis]
10 Hb_000795_040 0.0698054694 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
11 Hb_031284_010 0.0698902022 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
12 Hb_000445_060 0.072171274 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
13 Hb_005523_020 0.0749037555 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
14 Hb_004994_120 0.0761776354 - - PREDICTED: acyl-coenzyme A thioesterase 13-like isoform X1 [Jatropha curcas]
15 Hb_001252_230 0.0781889107 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
16 Hb_001635_210 0.0787788567 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
17 Hb_000749_010 0.0790528647 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
18 Hb_000390_230 0.0826123017 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
19 Hb_000175_410 0.0832494141 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
20 Hb_000120_210 0.083658415 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]

Gene co-expression network

sample Hb_005288_070 Hb_005288_070 Hb_007283_010 Hb_007283_010 Hb_005288_070--Hb_007283_010 Hb_030414_040 Hb_030414_040 Hb_005288_070--Hb_030414_040 Hb_007044_110 Hb_007044_110 Hb_005288_070--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_005288_070--Hb_000205_260 Hb_000457_230 Hb_000457_230 Hb_005288_070--Hb_000457_230 Hb_000111_170 Hb_000111_170 Hb_005288_070--Hb_000111_170 Hb_007283_010--Hb_000457_230 Hb_007283_010--Hb_030414_040 Hb_004324_330 Hb_004324_330 Hb_007283_010--Hb_004324_330 Hb_031284_010 Hb_031284_010 Hb_007283_010--Hb_031284_010 Hb_007283_010--Hb_000205_260 Hb_001158_160 Hb_001158_160 Hb_030414_040--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_030414_040--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_030414_040--Hb_000111_170 Hb_007044_110--Hb_000205_260 Hb_007044_110--Hb_000457_230 Hb_055235_020 Hb_055235_020 Hb_007044_110--Hb_055235_020 Hb_005523_020 Hb_005523_020 Hb_007044_110--Hb_005523_020 Hb_001636_050 Hb_001636_050 Hb_007044_110--Hb_001636_050 Hb_004976_010 Hb_004976_010 Hb_007044_110--Hb_004976_010 Hb_000205_260--Hb_005523_020 Hb_000205_260--Hb_000457_230 Hb_007305_020 Hb_007305_020 Hb_000205_260--Hb_007305_020 Hb_008059_010 Hb_008059_010 Hb_000205_260--Hb_008059_010 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_000085_210 Hb_000085_210 Hb_000111_170--Hb_000085_210 Hb_000363_310 Hb_000363_310 Hb_000111_170--Hb_000363_310 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_183433_010 Hb_183433_010 Hb_000111_170--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3964 25.0481 30.3556 13.4054 15.1964 17.5959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1424 15.1148 9.05269 16.7745 27.4154

CAGE analysis