Hb_004096_240

Information

Type -
Description -
Location Contig4096: 235339-240836
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13920g
description hypothetical protein
nr
ID XP_012077936.1
description PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5FMU8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13920g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40446: 235345-237525 , PASA_asmbl_40447: 236570-236840 , PASA_asmbl_40449: 237906-240539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_240 0.0 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
2 Hb_000120_210 0.0297800802 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
3 Hb_030414_040 0.0605906498 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
4 Hb_031284_010 0.0646719368 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
5 Hb_000375_390 0.0714036166 - - poly-A binding protein, putative [Ricinus communis]
6 Hb_021943_080 0.0729303139 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
7 Hb_003186_020 0.0731926296 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
8 Hb_001158_160 0.0732402743 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
9 Hb_021374_030 0.0743040173 - - hypothetical protein RCOM_0351490 [Ricinus communis]
10 Hb_001153_210 0.074711732 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
11 Hb_138435_010 0.0754482819 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
12 Hb_000640_160 0.0758286491 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
13 Hb_183433_010 0.0768789311 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
14 Hb_000254_100 0.076897351 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
15 Hb_077026_010 0.0780336638 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
16 Hb_000111_170 0.0786300573 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
17 Hb_008059_010 0.0788891862 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
18 Hb_087313_010 0.0799725018 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000061_180 0.0804093081 - - exonuclease, putative [Ricinus communis]
20 Hb_000214_050 0.0807200001 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004096_240 Hb_004096_240 Hb_000120_210 Hb_000120_210 Hb_004096_240--Hb_000120_210 Hb_030414_040 Hb_030414_040 Hb_004096_240--Hb_030414_040 Hb_031284_010 Hb_031284_010 Hb_004096_240--Hb_031284_010 Hb_000375_390 Hb_000375_390 Hb_004096_240--Hb_000375_390 Hb_021943_080 Hb_021943_080 Hb_004096_240--Hb_021943_080 Hb_003186_020 Hb_003186_020 Hb_004096_240--Hb_003186_020 Hb_000120_210--Hb_030414_040 Hb_000120_210--Hb_031284_010 Hb_001153_210 Hb_001153_210 Hb_000120_210--Hb_001153_210 Hb_000111_170 Hb_000111_170 Hb_000120_210--Hb_000111_170 Hb_000120_210--Hb_021943_080 Hb_001158_160 Hb_001158_160 Hb_030414_040--Hb_001158_160 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_030414_040--Hb_000111_170 Hb_008059_010 Hb_008059_010 Hb_031284_010--Hb_008059_010 Hb_000115_280 Hb_000115_280 Hb_031284_010--Hb_000115_280 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000457_230 Hb_000457_230 Hb_031284_010--Hb_000457_230 Hb_000023_260 Hb_000023_260 Hb_000375_390--Hb_000023_260 Hb_000061_180 Hb_000061_180 Hb_000375_390--Hb_000061_180 Hb_000035_090 Hb_000035_090 Hb_000375_390--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_000375_390--Hb_000230_400 Hb_000347_430 Hb_000347_430 Hb_000375_390--Hb_000347_430 Hb_021374_030 Hb_021374_030 Hb_000375_390--Hb_021374_030 Hb_021943_080--Hb_001158_160 Hb_001089_070 Hb_001089_070 Hb_021943_080--Hb_001089_070 Hb_016777_040 Hb_016777_040 Hb_021943_080--Hb_016777_040 Hb_077026_010 Hb_077026_010 Hb_021943_080--Hb_077026_010 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_003186_020--Hb_000115_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.94511 10.0781 19.1868 13.0422 9.92136 12.3814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.64426 9.09226 6.08255 8.20148 16.7609

CAGE analysis