Hb_030414_040

Information

Type transcription factor
Description TF Family: SET
Location Contig30414: 63729-76967
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa007425mg
description hypothetical protein
nr
ID XP_012081879.1
description PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
swissprot
ID Q945S8
description Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2
trembl
ID A0A067KB84
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_19243 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase ashh3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32087: 63820-75906 , PASA_asmbl_32088: 70794-76562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030414_040 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
2 Hb_001158_160 0.0568874629 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
3 Hb_000120_210 0.0569050529 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
4 Hb_005288_070 0.0574629798 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
5 Hb_004096_240 0.0605906498 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
6 Hb_000254_100 0.0621667871 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
7 Hb_000111_170 0.064162499 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
8 Hb_002876_300 0.065768787 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
9 Hb_007283_010 0.0663617338 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
10 Hb_031284_010 0.0671066355 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
11 Hb_183433_010 0.0710033407 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
12 Hb_000175_410 0.0716844638 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
13 Hb_021374_030 0.0727777652 - - hypothetical protein RCOM_0351490 [Ricinus communis]
14 Hb_001623_270 0.0740520448 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
15 Hb_001153_210 0.0742185195 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
16 Hb_003186_020 0.0743118389 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
17 Hb_000826_030 0.0763163871 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
18 Hb_138435_010 0.0782775615 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
19 Hb_000789_320 0.0790693412 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
20 Hb_093666_010 0.079284976 - - BnaC05g06620D [Brassica napus]

Gene co-expression network

sample Hb_030414_040 Hb_030414_040 Hb_001158_160 Hb_001158_160 Hb_030414_040--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_030414_040--Hb_000120_210 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_004096_240 Hb_004096_240 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_000111_170 Hb_000111_170 Hb_030414_040--Hb_000111_170 Hb_000826_030 Hb_000826_030 Hb_001158_160--Hb_000826_030 Hb_021943_080 Hb_021943_080 Hb_001158_160--Hb_021943_080 Hb_031284_010 Hb_031284_010 Hb_001158_160--Hb_031284_010 Hb_001158_160--Hb_000120_210 Hb_001158_160--Hb_004096_240 Hb_000120_210--Hb_004096_240 Hb_000120_210--Hb_031284_010 Hb_001153_210 Hb_001153_210 Hb_000120_210--Hb_001153_210 Hb_000120_210--Hb_000111_170 Hb_000120_210--Hb_021943_080 Hb_007283_010 Hb_007283_010 Hb_005288_070--Hb_007283_010 Hb_007044_110 Hb_007044_110 Hb_005288_070--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_005288_070--Hb_000205_260 Hb_000457_230 Hb_000457_230 Hb_005288_070--Hb_000457_230 Hb_005288_070--Hb_000111_170 Hb_004096_240--Hb_031284_010 Hb_000375_390 Hb_000375_390 Hb_004096_240--Hb_000375_390 Hb_004096_240--Hb_021943_080 Hb_003186_020 Hb_003186_020 Hb_004096_240--Hb_003186_020 Hb_000847_080 Hb_000847_080 Hb_000254_100--Hb_000847_080 Hb_004109_120 Hb_004109_120 Hb_000254_100--Hb_004109_120 Hb_000567_070 Hb_000567_070 Hb_000254_100--Hb_000567_070 Hb_000254_100--Hb_003186_020 Hb_001824_080 Hb_001824_080 Hb_000254_100--Hb_001824_080 Hb_000085_210 Hb_000085_210 Hb_000111_170--Hb_000085_210 Hb_000363_310 Hb_000363_310 Hb_000111_170--Hb_000363_310 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_183433_010 Hb_183433_010 Hb_000111_170--Hb_183433_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42632 6.39207 11.832 5.79615 4.85339 6.19042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.50187 5.34247 2.99847 6.34305 8.90907

CAGE analysis