Hb_004109_120

Information

Type -
Description -
Location Contig4109: 98569-104813
Sequence    

Annotation

kegg
ID rcu:RCOM_0477810
description ATP binding protein, putative
nr
ID XP_012089509.1
description PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
swissprot
ID O81635
description Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2
trembl
ID B9T3K9
description Kinesin-like protein OS=Ricinus communis GN=RCOM_0477810 PE=3 SV=1
Gene Ontology
ID GO:0005871
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40636: 99169-99799 , PASA_asmbl_40637: 104074-104562 , PASA_asmbl_40638: 105384-113772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_120 0.0 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
2 Hb_000207_300 0.056598214 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
3 Hb_000254_100 0.0610194662 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
4 Hb_001824_080 0.0629988904 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
5 Hb_000724_020 0.0763082727 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
6 Hb_001158_160 0.076685872 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
7 Hb_004339_040 0.0797334128 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
8 Hb_012438_030 0.0810661957 - - PREDICTED: protein sym-1 [Jatropha curcas]
9 Hb_007821_020 0.0824852415 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
10 Hb_000304_070 0.0834050686 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
11 Hb_000880_070 0.0836732776 - - gamma-tubulin complex component, putative [Ricinus communis]
12 Hb_030414_040 0.0855047626 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
13 Hb_004096_240 0.0873959336 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
14 Hb_000847_080 0.0879807622 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
15 Hb_005601_020 0.0884484641 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
16 Hb_000416_200 0.0885317863 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
17 Hb_001703_040 0.0901958791 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
18 Hb_000003_170 0.0903230272 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
19 Hb_002874_180 0.0937164925 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
20 Hb_033642_040 0.0951249703 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_120 Hb_004109_120 Hb_000207_300 Hb_000207_300 Hb_004109_120--Hb_000207_300 Hb_000254_100 Hb_000254_100 Hb_004109_120--Hb_000254_100 Hb_001824_080 Hb_001824_080 Hb_004109_120--Hb_001824_080 Hb_000724_020 Hb_000724_020 Hb_004109_120--Hb_000724_020 Hb_001158_160 Hb_001158_160 Hb_004109_120--Hb_001158_160 Hb_004339_040 Hb_004339_040 Hb_004109_120--Hb_004339_040 Hb_003728_100 Hb_003728_100 Hb_000207_300--Hb_003728_100 Hb_009225_020 Hb_009225_020 Hb_000207_300--Hb_009225_020 Hb_000304_070 Hb_000304_070 Hb_000207_300--Hb_000304_070 Hb_000212_440 Hb_000212_440 Hb_000207_300--Hb_000212_440 Hb_000207_300--Hb_001824_080 Hb_000847_080 Hb_000847_080 Hb_000254_100--Hb_000847_080 Hb_030414_040 Hb_030414_040 Hb_000254_100--Hb_030414_040 Hb_000567_070 Hb_000567_070 Hb_000254_100--Hb_000567_070 Hb_003186_020 Hb_003186_020 Hb_000254_100--Hb_003186_020 Hb_000254_100--Hb_001824_080 Hb_004109_260 Hb_004109_260 Hb_001824_080--Hb_004109_260 Hb_001824_080--Hb_000304_070 Hb_001824_080--Hb_004339_040 Hb_007821_020 Hb_007821_020 Hb_001824_080--Hb_007821_020 Hb_004032_370 Hb_004032_370 Hb_000724_020--Hb_004032_370 Hb_004096_060 Hb_004096_060 Hb_000724_020--Hb_004096_060 Hb_001053_190 Hb_001053_190 Hb_000724_020--Hb_001053_190 Hb_003228_100 Hb_003228_100 Hb_000724_020--Hb_003228_100 Hb_000579_080 Hb_000579_080 Hb_000724_020--Hb_000579_080 Hb_001158_160--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_001158_160--Hb_000826_030 Hb_021943_080 Hb_021943_080 Hb_001158_160--Hb_021943_080 Hb_031284_010 Hb_031284_010 Hb_001158_160--Hb_031284_010 Hb_000120_210 Hb_000120_210 Hb_001158_160--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_001158_160--Hb_004096_240 Hb_000880_070 Hb_000880_070 Hb_004339_040--Hb_000880_070 Hb_004339_040--Hb_004109_260 Hb_001623_500 Hb_001623_500 Hb_004339_040--Hb_001623_500 Hb_005946_040 Hb_005946_040 Hb_004339_040--Hb_005946_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.5829 2.42596 8.82476 4.37284 3.71273 3.65263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.93368 2.72067 2.76902 4.33767 6.58377

CAGE analysis