Hb_000880_070

Information

Type -
Description -
Location Contig880: 102078-121659
Sequence    

Annotation

kegg
ID rcu:RCOM_0952160
description gamma-tubulin complex component, putative
nr
ID XP_002515845.1
description gamma-tubulin complex component, putative [Ricinus communis]
swissprot
ID Q96RT7
description Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1 SV=3
trembl
ID B9RQ26
description Gamma-tubulin complex component, putative OS=Ricinus communis GN=RCOM_0952160 PE=4 SV=1
Gene Ontology
ID GO:0000922
description gamma-tubulin complex

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61411: 101953-111112 , PASA_asmbl_61412: 111685-113376 , PASA_asmbl_61413: 114283-116151 , PASA_asmbl_61414: 116900-118015 , PASA_asmbl_61415: 119292-120415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000880_070 0.0 - - gamma-tubulin complex component, putative [Ricinus communis]
2 Hb_000321_140 0.0647355285 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_004339_040 0.0740006641 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
4 Hb_004100_050 0.0765548446 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
5 Hb_002055_020 0.0771179234 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
6 Hb_000254_100 0.0789052908 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
7 Hb_001824_080 0.0807150294 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
8 Hb_004109_120 0.0836732776 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
9 Hb_008206_080 0.0871177004 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
10 Hb_000579_080 0.0897933708 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
11 Hb_004109_260 0.0902797404 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
12 Hb_008304_020 0.0907191023 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
13 Hb_000416_200 0.0912348123 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
14 Hb_001703_040 0.0913076685 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
15 Hb_000567_070 0.0914107648 - - autophagy protein, putative [Ricinus communis]
16 Hb_001348_080 0.0935673083 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
17 Hb_000085_170 0.0940214673 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
18 Hb_007894_150 0.0942676474 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
19 Hb_000975_210 0.0947012104 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
20 Hb_004324_360 0.0950028616 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000880_070 Hb_000880_070 Hb_000321_140 Hb_000321_140 Hb_000880_070--Hb_000321_140 Hb_004339_040 Hb_004339_040 Hb_000880_070--Hb_004339_040 Hb_004100_050 Hb_004100_050 Hb_000880_070--Hb_004100_050 Hb_002055_020 Hb_002055_020 Hb_000880_070--Hb_002055_020 Hb_000254_100 Hb_000254_100 Hb_000880_070--Hb_000254_100 Hb_001824_080 Hb_001824_080 Hb_000880_070--Hb_001824_080 Hb_000321_140--Hb_002055_020 Hb_000085_170 Hb_000085_170 Hb_000321_140--Hb_000085_170 Hb_001009_280 Hb_001009_280 Hb_000321_140--Hb_001009_280 Hb_000610_040 Hb_000610_040 Hb_000321_140--Hb_000610_040 Hb_000510_360 Hb_000510_360 Hb_000321_140--Hb_000510_360 Hb_004339_040--Hb_001824_080 Hb_004109_120 Hb_004109_120 Hb_004339_040--Hb_004109_120 Hb_004109_260 Hb_004109_260 Hb_004339_040--Hb_004109_260 Hb_001623_500 Hb_001623_500 Hb_004339_040--Hb_001623_500 Hb_005946_040 Hb_005946_040 Hb_004339_040--Hb_005946_040 Hb_001703_040 Hb_001703_040 Hb_004100_050--Hb_001703_040 Hb_002716_060 Hb_002716_060 Hb_004100_050--Hb_002716_060 Hb_001025_120 Hb_001025_120 Hb_004100_050--Hb_001025_120 Hb_089839_010 Hb_089839_010 Hb_004100_050--Hb_089839_010 Hb_000260_460 Hb_000260_460 Hb_004100_050--Hb_000260_460 Hb_002055_020--Hb_001009_280 Hb_002055_020--Hb_000254_100 Hb_000567_070 Hb_000567_070 Hb_002055_020--Hb_000567_070 Hb_000390_230 Hb_000390_230 Hb_002055_020--Hb_000390_230 Hb_170416_010 Hb_170416_010 Hb_002055_020--Hb_170416_010 Hb_000847_080 Hb_000847_080 Hb_000254_100--Hb_000847_080 Hb_000254_100--Hb_004109_120 Hb_030414_040 Hb_030414_040 Hb_000254_100--Hb_030414_040 Hb_000254_100--Hb_000567_070 Hb_003186_020 Hb_003186_020 Hb_000254_100--Hb_003186_020 Hb_000254_100--Hb_001824_080 Hb_001824_080--Hb_004109_120 Hb_001824_080--Hb_004109_260 Hb_000304_070 Hb_000304_070 Hb_001824_080--Hb_000304_070 Hb_007821_020 Hb_007821_020 Hb_001824_080--Hb_007821_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34981 1.7967 4.71146 1.90318 1.84184 1.81273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19578 1.46384 1.99091 2.95098 3.00537

CAGE analysis