Hb_001009_280

Information

Type -
Description -
Location Contig1009: 169235-175364
Sequence    

Annotation

kegg
ID rcu:RCOM_1507370
description hypothetical protein
nr
ID XP_012079905.1
description PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
swissprot
ID Q9DC40
description Telomere length regulation protein TEL2 homolog OS=Mus musculus GN=Telo2 PE=1 SV=2
trembl
ID B9RAM7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1507370 PE=4 SV=1
Gene Ontology
ID GO:0005840
description telomere length regulation protein tel2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00540: 169254-169733 , PASA_asmbl_00543: 171320-172231 , PASA_asmbl_00544: 172597-174827 , PASA_asmbl_00545: 175089-175276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_280 0.0 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
2 Hb_000321_140 0.0601812364 - - RNA-binding protein, putative [Ricinus communis]
3 Hb_183510_020 0.0646614755 - - coated vesicle membrane protein, putative [Ricinus communis]
4 Hb_002055_020 0.0691547877 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
5 Hb_002046_010 0.0698268203 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000617_230 0.0729031812 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
7 Hb_027506_010 0.0733855647 - - PREDICTED: cullin-4 [Jatropha curcas]
8 Hb_000107_660 0.0767320434 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
9 Hb_003528_050 0.0789965964 - - protein transporter, putative [Ricinus communis]
10 Hb_088144_020 0.0800476268 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
11 Hb_002411_110 0.0802335198 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
12 Hb_004787_080 0.0807387579 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
13 Hb_000510_360 0.0820777958 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
14 Hb_000979_220 0.0825569382 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
15 Hb_003835_070 0.0829052357 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
16 Hb_000684_510 0.0837014332 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
17 Hb_000011_100 0.0837894481 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
18 Hb_001221_180 0.0838640411 - - calcineurin-like phosphoesterase [Manihot esculenta]
19 Hb_001430_080 0.0842125832 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
20 Hb_001998_240 0.0848259361 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]

Gene co-expression network

sample Hb_001009_280 Hb_001009_280 Hb_000321_140 Hb_000321_140 Hb_001009_280--Hb_000321_140 Hb_183510_020 Hb_183510_020 Hb_001009_280--Hb_183510_020 Hb_002055_020 Hb_002055_020 Hb_001009_280--Hb_002055_020 Hb_002046_010 Hb_002046_010 Hb_001009_280--Hb_002046_010 Hb_000617_230 Hb_000617_230 Hb_001009_280--Hb_000617_230 Hb_027506_010 Hb_027506_010 Hb_001009_280--Hb_027506_010 Hb_000321_140--Hb_002055_020 Hb_000085_170 Hb_000085_170 Hb_000321_140--Hb_000085_170 Hb_000610_040 Hb_000610_040 Hb_000321_140--Hb_000610_040 Hb_000510_360 Hb_000510_360 Hb_000321_140--Hb_000510_360 Hb_000880_070 Hb_000880_070 Hb_000321_140--Hb_000880_070 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_000011_100 Hb_000011_100 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150 Hb_000254_100 Hb_000254_100 Hb_002055_020--Hb_000254_100 Hb_000567_070 Hb_000567_070 Hb_002055_020--Hb_000567_070 Hb_000390_230 Hb_000390_230 Hb_002055_020--Hb_000390_230 Hb_170416_010 Hb_170416_010 Hb_002055_020--Hb_170416_010 Hb_000742_170 Hb_000742_170 Hb_002046_010--Hb_000742_170 Hb_000979_220 Hb_000979_220 Hb_002046_010--Hb_000979_220 Hb_002046_010--Hb_183510_020 Hb_016734_060 Hb_016734_060 Hb_002046_010--Hb_016734_060 Hb_005333_050 Hb_005333_050 Hb_002046_010--Hb_005333_050 Hb_000189_600 Hb_000189_600 Hb_000617_230--Hb_000189_600 Hb_001430_080 Hb_001430_080 Hb_000617_230--Hb_001430_080 Hb_001878_050 Hb_001878_050 Hb_000617_230--Hb_001878_050 Hb_003835_070 Hb_003835_070 Hb_000617_230--Hb_003835_070 Hb_001279_170 Hb_001279_170 Hb_000617_230--Hb_001279_170 Hb_060980_010 Hb_060980_010 Hb_027506_010--Hb_060980_010 Hb_016172_030 Hb_016172_030 Hb_027506_010--Hb_016172_030 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_000409_050 Hb_000409_050 Hb_027506_010--Hb_000409_050 Hb_065500_020 Hb_065500_020 Hb_027506_010--Hb_065500_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.70272 4.18662 4.70146 2.82821 3.23931 2.91137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98762 2.52822 2.79119 5.93401 3.68188

CAGE analysis