Hb_000742_170

Information

Type -
Description -
Location Contig742: 146527-158577
Sequence    

Annotation

kegg
ID rcu:RCOM_1337110
description 3-hydroxyisobutyrate dehydrogenase, putative (EC:1.1.1.31)
nr
ID XP_012075605.1
description PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q9SUC0
description Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3
trembl
ID A0A067KIT0
description 3-hydroxyisobutyrate dehydrogenase OS=Jatropha curcas GN=JCGZ_09211 PE=3 SV=1
Gene Ontology
ID GO:0004616
description probable 3-hydroxyisobutyrate mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56498: 146532-148075 , PASA_asmbl_56499: 149352-158674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_170 0.0 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_002046_010 0.065714732 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003683_010 0.0786717647 - - longevity assurance factor, putative [Ricinus communis]
4 Hb_000022_150 0.0908734344 - - -
5 Hb_005333_050 0.0922235315 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
6 Hb_000011_270 0.0968420419 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
7 Hb_004096_190 0.0968455492 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
8 Hb_001221_180 0.0997112189 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_000189_320 0.1016120801 - - PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
10 Hb_016734_060 0.1054732709 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
11 Hb_057688_010 0.107917155 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
12 Hb_003093_040 0.1082292484 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
13 Hb_002217_430 0.1103756669 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
14 Hb_000603_030 0.1112100662 - - Ribonuclease III, putative [Ricinus communis]
15 Hb_163256_010 0.1124307591 - - PREDICTED: phosphoglucomutase, chloroplastic [Jatropha curcas]
16 Hb_004787_080 0.1134213013 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
17 Hb_019840_030 0.1145244888 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
18 Hb_001862_130 0.1163500906 - - Protein FRIGIDA, putative [Ricinus communis]
19 Hb_002374_230 0.1171941411 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
20 Hb_001341_180 0.1172536812 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]

Gene co-expression network

sample Hb_000742_170 Hb_000742_170 Hb_002046_010 Hb_002046_010 Hb_000742_170--Hb_002046_010 Hb_003683_010 Hb_003683_010 Hb_000742_170--Hb_003683_010 Hb_000022_150 Hb_000022_150 Hb_000742_170--Hb_000022_150 Hb_005333_050 Hb_005333_050 Hb_000742_170--Hb_005333_050 Hb_000011_270 Hb_000011_270 Hb_000742_170--Hb_000011_270 Hb_004096_190 Hb_004096_190 Hb_000742_170--Hb_004096_190 Hb_001009_280 Hb_001009_280 Hb_002046_010--Hb_001009_280 Hb_000979_220 Hb_000979_220 Hb_002046_010--Hb_000979_220 Hb_183510_020 Hb_183510_020 Hb_002046_010--Hb_183510_020 Hb_016734_060 Hb_016734_060 Hb_002046_010--Hb_016734_060 Hb_002046_010--Hb_005333_050 Hb_028960_030 Hb_028960_030 Hb_003683_010--Hb_028960_030 Hb_003777_290 Hb_003777_290 Hb_003683_010--Hb_003777_290 Hb_000009_030 Hb_000009_030 Hb_003683_010--Hb_000009_030 Hb_163256_010 Hb_163256_010 Hb_003683_010--Hb_163256_010 Hb_005489_040 Hb_005489_040 Hb_003683_010--Hb_005489_040 Hb_000022_150--Hb_005333_050 Hb_000317_350 Hb_000317_350 Hb_000022_150--Hb_000317_350 Hb_000800_110 Hb_000800_110 Hb_000022_150--Hb_000800_110 Hb_004218_250 Hb_004218_250 Hb_000022_150--Hb_004218_250 Hb_000950_060 Hb_000950_060 Hb_000022_150--Hb_000950_060 Hb_019840_030 Hb_019840_030 Hb_005333_050--Hb_019840_030 Hb_039946_050 Hb_039946_050 Hb_005333_050--Hb_039946_050 Hb_000009_120 Hb_000009_120 Hb_005333_050--Hb_000009_120 Hb_002889_020 Hb_002889_020 Hb_005333_050--Hb_002889_020 Hb_003093_040 Hb_003093_040 Hb_000011_270--Hb_003093_040 Hb_001221_180 Hb_001221_180 Hb_000011_270--Hb_001221_180 Hb_000568_050 Hb_000568_050 Hb_000011_270--Hb_000568_050 Hb_000175_410 Hb_000175_410 Hb_000011_270--Hb_000175_410 Hb_002357_070 Hb_002357_070 Hb_000011_270--Hb_002357_070 Hb_000001_170 Hb_000001_170 Hb_000011_270--Hb_000001_170 Hb_028872_070 Hb_028872_070 Hb_004096_190--Hb_028872_070 Hb_000603_030 Hb_000603_030 Hb_004096_190--Hb_000603_030 Hb_003943_020 Hb_003943_020 Hb_004096_190--Hb_003943_020 Hb_000134_270 Hb_000134_270 Hb_004096_190--Hb_000134_270 Hb_001733_030 Hb_001733_030 Hb_004096_190--Hb_001733_030 Hb_000398_080 Hb_000398_080 Hb_004096_190--Hb_000398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.75093 6.44718 7.83335 5.94633 6.9101 5.82214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.98625 4.01578 2.15853 15.0693 9.18862

CAGE analysis