Hb_002046_010

Information

Type -
Description -
Location Contig2046: 7237-10439
Sequence    

Annotation

kegg
ID rcu:RCOM_1074850
description hypothetical protein
nr
ID XP_002527184.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5NBI2
description Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1
trembl
ID B9SMG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1074850 PE=3 SV=1
Gene Ontology
ID GO:0005634
description actin-related protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21061: 7778-9333 , PASA_asmbl_21062: 9391-10081 , PASA_asmbl_21063: 9557-10081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000742_170 0.065714732 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001009_280 0.0698268203 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
4 Hb_000979_220 0.0738693843 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
5 Hb_183510_020 0.0754138649 - - coated vesicle membrane protein, putative [Ricinus communis]
6 Hb_016734_060 0.0761191801 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
7 Hb_005333_050 0.0774268377 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
8 Hb_004787_080 0.0794641419 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
9 Hb_001221_180 0.0810222287 - - calcineurin-like phosphoesterase [Manihot esculenta]
10 Hb_002217_430 0.0826745254 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
11 Hb_021576_010 0.0848339814 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
12 Hb_010921_050 0.0848990943 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
13 Hb_003777_290 0.0873527719 - - polypyrimidine tract binding protein, putative [Ricinus communis]
14 Hb_027506_010 0.0879624219 - - PREDICTED: cullin-4 [Jatropha curcas]
15 Hb_000409_050 0.090303535 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
16 Hb_057688_010 0.0922455529 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
17 Hb_001301_150 0.093172975 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
18 Hb_003528_050 0.0938459188 - - protein transporter, putative [Ricinus communis]
19 Hb_000011_270 0.0939466417 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
20 Hb_000603_030 0.0939572896 - - Ribonuclease III, putative [Ricinus communis]

Gene co-expression network

sample Hb_002046_010 Hb_002046_010 Hb_000742_170 Hb_000742_170 Hb_002046_010--Hb_000742_170 Hb_001009_280 Hb_001009_280 Hb_002046_010--Hb_001009_280 Hb_000979_220 Hb_000979_220 Hb_002046_010--Hb_000979_220 Hb_183510_020 Hb_183510_020 Hb_002046_010--Hb_183510_020 Hb_016734_060 Hb_016734_060 Hb_002046_010--Hb_016734_060 Hb_005333_050 Hb_005333_050 Hb_002046_010--Hb_005333_050 Hb_003683_010 Hb_003683_010 Hb_000742_170--Hb_003683_010 Hb_000022_150 Hb_000022_150 Hb_000742_170--Hb_000022_150 Hb_000742_170--Hb_005333_050 Hb_000011_270 Hb_000011_270 Hb_000742_170--Hb_000011_270 Hb_004096_190 Hb_004096_190 Hb_000742_170--Hb_004096_190 Hb_000321_140 Hb_000321_140 Hb_001009_280--Hb_000321_140 Hb_001009_280--Hb_183510_020 Hb_002055_020 Hb_002055_020 Hb_001009_280--Hb_002055_020 Hb_000617_230 Hb_000617_230 Hb_001009_280--Hb_000617_230 Hb_027506_010 Hb_027506_010 Hb_001009_280--Hb_027506_010 Hb_021576_010 Hb_021576_010 Hb_000979_220--Hb_021576_010 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_003777_290 Hb_003777_290 Hb_000979_220--Hb_003777_290 Hb_000979_220--Hb_027506_010 Hb_004096_110 Hb_004096_110 Hb_000979_220--Hb_004096_110 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_000011_100 Hb_000011_100 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150 Hb_001031_090 Hb_001031_090 Hb_016734_060--Hb_001031_090 Hb_002217_430 Hb_002217_430 Hb_016734_060--Hb_002217_430 Hb_002016_090 Hb_002016_090 Hb_016734_060--Hb_002016_090 Hb_002805_210 Hb_002805_210 Hb_016734_060--Hb_002805_210 Hb_027472_220 Hb_027472_220 Hb_016734_060--Hb_027472_220 Hb_019840_030 Hb_019840_030 Hb_005333_050--Hb_019840_030 Hb_005333_050--Hb_000022_150 Hb_039946_050 Hb_039946_050 Hb_005333_050--Hb_039946_050 Hb_000009_120 Hb_000009_120 Hb_005333_050--Hb_000009_120 Hb_002889_020 Hb_002889_020 Hb_005333_050--Hb_002889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63999 5.62252 5.77734 4.42764 5.0318 3.87405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63358 3.95376 2.56724 10.1359 5.8911

CAGE analysis