Hb_000979_220

Information

Type -
Description -
Location Contig979: 216265-221386
Sequence    

Annotation

kegg
ID rcu:RCOM_0629290
description hypothetical protein
nr
ID XP_012072256.1
description PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
swissprot
ID A0JMW6
description Transmembrane protein 214-A OS=Xenopus laevis GN=tmem214-a PE=2 SV=1
trembl
ID B9SP73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0629290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64317: 216306-221386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000979_220 0.0 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
2 Hb_021576_010 0.0449438333 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
3 Hb_003528_050 0.0586760488 - - protein transporter, putative [Ricinus communis]
4 Hb_003777_290 0.061648239 - - polypyrimidine tract binding protein, putative [Ricinus communis]
5 Hb_027506_010 0.0650740487 - - PREDICTED: cullin-4 [Jatropha curcas]
6 Hb_004096_110 0.0707805928 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
7 Hb_002046_010 0.0738693843 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011883_020 0.0747294412 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_000787_200 0.0805259476 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000510_340 0.0807901997 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
11 Hb_000409_050 0.0816833656 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
12 Hb_006189_020 0.0818366416 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
13 Hb_060980_010 0.0824075466 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
14 Hb_001009_280 0.0825569382 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
15 Hb_001300_280 0.0828914833 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
16 Hb_028960_030 0.0838993732 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
17 Hb_001828_180 0.0840817278 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
18 Hb_011224_160 0.0844740697 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
19 Hb_000327_250 0.085348029 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
20 Hb_019840_030 0.0880898497 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000979_220 Hb_000979_220 Hb_021576_010 Hb_021576_010 Hb_000979_220--Hb_021576_010 Hb_003528_050 Hb_003528_050 Hb_000979_220--Hb_003528_050 Hb_003777_290 Hb_003777_290 Hb_000979_220--Hb_003777_290 Hb_027506_010 Hb_027506_010 Hb_000979_220--Hb_027506_010 Hb_004096_110 Hb_004096_110 Hb_000979_220--Hb_004096_110 Hb_002046_010 Hb_002046_010 Hb_000979_220--Hb_002046_010 Hb_021576_010--Hb_004096_110 Hb_021576_010--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_021576_010--Hb_000327_250 Hb_016347_010 Hb_016347_010 Hb_021576_010--Hb_016347_010 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180 Hb_003528_050--Hb_027506_010 Hb_011883_020 Hb_011883_020 Hb_003528_050--Hb_011883_020 Hb_000510_340 Hb_000510_340 Hb_003528_050--Hb_000510_340 Hb_000173_190 Hb_000173_190 Hb_003528_050--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_003528_050--Hb_001300_280 Hb_003777_290--Hb_004096_110 Hb_011224_160 Hb_011224_160 Hb_003777_290--Hb_011224_160 Hb_000363_190 Hb_000363_190 Hb_003777_290--Hb_000363_190 Hb_005489_040 Hb_005489_040 Hb_003777_290--Hb_005489_040 Hb_060980_010 Hb_060980_010 Hb_027506_010--Hb_060980_010 Hb_016172_030 Hb_016172_030 Hb_027506_010--Hb_016172_030 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_000409_050 Hb_000409_050 Hb_027506_010--Hb_000409_050 Hb_065500_020 Hb_065500_020 Hb_027506_010--Hb_065500_020 Hb_004096_110--Hb_000327_250 Hb_004096_110--Hb_011883_020 Hb_001269_600 Hb_001269_600 Hb_004096_110--Hb_001269_600 Hb_000742_170 Hb_000742_170 Hb_002046_010--Hb_000742_170 Hb_001009_280 Hb_001009_280 Hb_002046_010--Hb_001009_280 Hb_183510_020 Hb_183510_020 Hb_002046_010--Hb_183510_020 Hb_016734_060 Hb_016734_060 Hb_002046_010--Hb_016734_060 Hb_005333_050 Hb_005333_050 Hb_002046_010--Hb_005333_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.80039 15.9814 17.933 15.36 11.5686 6.9854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4807 10.3203 9.85184 26.7367 15.6978

CAGE analysis