Hb_001300_280

Information

Type -
Description -
Location Contig1300: 217060-221403
Sequence    

Annotation

kegg
ID pmum:103333850
description mitochondrial substrate carrier family protein ucpB
nr
ID XP_012092352.1
description PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
swissprot
ID B0G143
description Mitochondrial substrate carrier family protein ucpB OS=Dictyostelium discoideum GN=ucpB PE=3 SV=1
trembl
ID A0A067JCL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22018 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial substrate carrier family protein ucpb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08988: 218901-221061 , PASA_asmbl_08989: 218244-219535 , PASA_asmbl_08990: 218956-219218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_280 0.0 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
2 Hb_001635_110 0.0593157288 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
3 Hb_178968_060 0.0642095781 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
4 Hb_000173_190 0.0659500754 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003636_080 0.0673829008 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
6 Hb_006588_060 0.0696731489 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
7 Hb_012092_050 0.0703843846 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
8 Hb_007257_060 0.072017905 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
9 Hb_003528_050 0.0775575336 - - protein transporter, putative [Ricinus communis]
10 Hb_008304_020 0.0798971835 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
11 Hb_003687_120 0.0822464 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
12 Hb_000979_220 0.0828914833 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
13 Hb_033642_120 0.0855172943 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
14 Hb_001357_310 0.0879032155 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
15 Hb_010775_030 0.0891373843 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
16 Hb_011674_040 0.0896009211 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
17 Hb_000076_210 0.0899591799 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
18 Hb_001221_440 0.0912829829 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
19 Hb_006189_020 0.0917169219 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
20 Hb_004333_040 0.0932286486 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]

Gene co-expression network

sample Hb_001300_280 Hb_001300_280 Hb_001635_110 Hb_001635_110 Hb_001300_280--Hb_001635_110 Hb_178968_060 Hb_178968_060 Hb_001300_280--Hb_178968_060 Hb_000173_190 Hb_000173_190 Hb_001300_280--Hb_000173_190 Hb_003636_080 Hb_003636_080 Hb_001300_280--Hb_003636_080 Hb_006588_060 Hb_006588_060 Hb_001300_280--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_001300_280--Hb_012092_050 Hb_001635_110--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_001635_110--Hb_008304_020 Hb_001635_110--Hb_000173_190 Hb_006189_020 Hb_006189_020 Hb_001635_110--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_001635_110--Hb_003098_070 Hb_000230_460 Hb_000230_460 Hb_178968_060--Hb_000230_460 Hb_003498_100 Hb_003498_100 Hb_178968_060--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_178968_060--Hb_000120_890 Hb_001221_440 Hb_001221_440 Hb_178968_060--Hb_001221_440 Hb_006100_020 Hb_006100_020 Hb_000173_190--Hb_006100_020 Hb_000318_150 Hb_000318_150 Hb_000173_190--Hb_000318_150 Hb_000035_100 Hb_000035_100 Hb_000173_190--Hb_000035_100 Hb_000960_080 Hb_000960_080 Hb_000173_190--Hb_000960_080 Hb_006468_010 Hb_006468_010 Hb_003636_080--Hb_006468_010 Hb_011674_040 Hb_011674_040 Hb_003636_080--Hb_011674_040 Hb_003636_080--Hb_000173_190 Hb_003636_080--Hb_000318_150 Hb_000787_200 Hb_000787_200 Hb_003636_080--Hb_000787_200 Hb_008114_040 Hb_008114_040 Hb_006588_060--Hb_008114_040 Hb_010775_030 Hb_010775_030 Hb_006588_060--Hb_010775_030 Hb_000008_420 Hb_000008_420 Hb_006588_060--Hb_000008_420 Hb_006588_060--Hb_012092_050 Hb_050847_050 Hb_050847_050 Hb_006588_060--Hb_050847_050 Hb_007257_060 Hb_007257_060 Hb_012092_050--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_012092_050--Hb_002014_010 Hb_012092_050--Hb_001635_110 Hb_004109_320 Hb_004109_320 Hb_012092_050--Hb_004109_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27731 3.02142 3.91766 2.54085 1.68468 1.02284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6613 2.07404 1.09116 3.41097 2.39536

CAGE analysis