Hb_007257_060

Information

Type -
Description -
Location Contig7257: 40233-45529
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23950g
description POPTRDRAFT_819468; carbon-nitrogen hydrolase family protein
nr
ID XP_012077220.1
description PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
swissprot
ID Q8RUF8
description Omega-amidase,chloroplastic OS=Arabidopsis thaliana GN=NLP3 PE=1 SV=1
trembl
ID A0A067KGA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07619 PE=4 SV=1
Gene Ontology
ID GO:0005829
description carbon-nitrogen hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55845: 40307-45457 , PASA_asmbl_55846: 40599-41738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007257_060 0.0 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
2 Hb_012092_050 0.0590828156 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
3 Hb_001300_280 0.072017905 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
4 Hb_001357_310 0.0750925875 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
5 Hb_000008_420 0.0786404127 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
6 Hb_006588_060 0.0819300608 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
7 Hb_000402_150 0.0826179451 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
8 Hb_050847_050 0.0838913701 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
9 Hb_000510_340 0.0888596437 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
10 Hb_000979_220 0.0917147518 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
11 Hb_000088_270 0.0922700741 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
12 Hb_000555_100 0.0930025662 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
13 Hb_002982_020 0.0934976091 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
14 Hb_001369_300 0.0943475552 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
15 Hb_000778_010 0.0966228382 - - hypothetical protein [Bacillus subtilis]
16 Hb_010775_030 0.09768418 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
17 Hb_000076_210 0.0981513143 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
18 Hb_001828_180 0.0994654959 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
19 Hb_003528_050 0.0996811522 - - protein transporter, putative [Ricinus communis]
20 Hb_164390_010 0.1001340987 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]

Gene co-expression network

sample Hb_007257_060 Hb_007257_060 Hb_012092_050 Hb_012092_050 Hb_007257_060--Hb_012092_050 Hb_001300_280 Hb_001300_280 Hb_007257_060--Hb_001300_280 Hb_001357_310 Hb_001357_310 Hb_007257_060--Hb_001357_310 Hb_000008_420 Hb_000008_420 Hb_007257_060--Hb_000008_420 Hb_006588_060 Hb_006588_060 Hb_007257_060--Hb_006588_060 Hb_000402_150 Hb_000402_150 Hb_007257_060--Hb_000402_150 Hb_002014_010 Hb_002014_010 Hb_012092_050--Hb_002014_010 Hb_012092_050--Hb_001300_280 Hb_001635_110 Hb_001635_110 Hb_012092_050--Hb_001635_110 Hb_012092_050--Hb_006588_060 Hb_004109_320 Hb_004109_320 Hb_012092_050--Hb_004109_320 Hb_001300_280--Hb_001635_110 Hb_178968_060 Hb_178968_060 Hb_001300_280--Hb_178968_060 Hb_000173_190 Hb_000173_190 Hb_001300_280--Hb_000173_190 Hb_003636_080 Hb_003636_080 Hb_001300_280--Hb_003636_080 Hb_001300_280--Hb_006588_060 Hb_010775_030 Hb_010775_030 Hb_001357_310--Hb_010775_030 Hb_001357_310--Hb_002014_010 Hb_001357_310--Hb_012092_050 Hb_001357_310--Hb_000402_150 Hb_001357_310--Hb_006588_060 Hb_000088_270 Hb_000088_270 Hb_000008_420--Hb_000088_270 Hb_000008_420--Hb_006588_060 Hb_000008_420--Hb_012092_050 Hb_007423_050 Hb_007423_050 Hb_000008_420--Hb_007423_050 Hb_000920_300 Hb_000920_300 Hb_000008_420--Hb_000920_300 Hb_008114_040 Hb_008114_040 Hb_006588_060--Hb_008114_040 Hb_006588_060--Hb_010775_030 Hb_050847_050 Hb_050847_050 Hb_006588_060--Hb_050847_050 Hb_000402_150--Hb_008114_040 Hb_000684_510 Hb_000684_510 Hb_000402_150--Hb_000684_510 Hb_001878_050 Hb_001878_050 Hb_000402_150--Hb_001878_050 Hb_000402_150--Hb_012092_050 Hb_000402_150--Hb_006588_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22768 8.77014 10.4225 9.23224 4.66761 3.26031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12818 7.311 4.23385 11.907 5.57288

CAGE analysis