Hb_006588_060

Information

Type -
Description -
Location Contig6588: 45531-50594
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04650g
description transducin family protein
nr
ID XP_012088222.1
description PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
swissprot
ID Q5ZLK1
description DDB1- and CUL4-associated factor 13 OS=Gallus gallus GN=DCAF13 PE=2 SV=1
trembl
ID A0A067JJL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25744 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ddb1- and cul4-associated factor 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52872: 45851-50631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_060 0.0 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
2 Hb_001300_280 0.0696731489 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
3 Hb_008114_040 0.071450576 - - Fanconi anemia group D2 [Gossypium arboreum]
4 Hb_010775_030 0.0716199621 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
5 Hb_000008_420 0.0742433519 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
6 Hb_012092_050 0.0750687954 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
7 Hb_050847_050 0.0758290379 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
8 Hb_000086_420 0.0792764548 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
9 Hb_003528_050 0.0792918703 - - protein transporter, putative [Ricinus communis]
10 Hb_000402_150 0.0802750663 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
11 Hb_000699_150 0.0808331892 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
12 Hb_002400_340 0.0809383013 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
13 Hb_001357_310 0.0811749706 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
14 Hb_000617_230 0.0817640976 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
15 Hb_007257_060 0.0819300608 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
16 Hb_000176_020 0.0819465672 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
17 Hb_164390_010 0.0820426252 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
18 Hb_002014_010 0.0820842655 - - Uncharacterized protein isoform 1 [Theobroma cacao]
19 Hb_000510_340 0.0828796339 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
20 Hb_000189_600 0.0880836181 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006588_060 Hb_006588_060 Hb_001300_280 Hb_001300_280 Hb_006588_060--Hb_001300_280 Hb_008114_040 Hb_008114_040 Hb_006588_060--Hb_008114_040 Hb_010775_030 Hb_010775_030 Hb_006588_060--Hb_010775_030 Hb_000008_420 Hb_000008_420 Hb_006588_060--Hb_000008_420 Hb_012092_050 Hb_012092_050 Hb_006588_060--Hb_012092_050 Hb_050847_050 Hb_050847_050 Hb_006588_060--Hb_050847_050 Hb_001635_110 Hb_001635_110 Hb_001300_280--Hb_001635_110 Hb_178968_060 Hb_178968_060 Hb_001300_280--Hb_178968_060 Hb_000173_190 Hb_000173_190 Hb_001300_280--Hb_000173_190 Hb_003636_080 Hb_003636_080 Hb_001300_280--Hb_003636_080 Hb_001300_280--Hb_012092_050 Hb_000402_150 Hb_000402_150 Hb_008114_040--Hb_000402_150 Hb_000189_600 Hb_000189_600 Hb_008114_040--Hb_000189_600 Hb_004333_040 Hb_004333_040 Hb_008114_040--Hb_004333_040 Hb_002400_340 Hb_002400_340 Hb_008114_040--Hb_002400_340 Hb_000617_230 Hb_000617_230 Hb_008114_040--Hb_000617_230 Hb_001357_310 Hb_001357_310 Hb_010775_030--Hb_001357_310 Hb_002110_160 Hb_002110_160 Hb_010775_030--Hb_002110_160 Hb_002014_010 Hb_002014_010 Hb_010775_030--Hb_002014_010 Hb_000086_420 Hb_000086_420 Hb_010775_030--Hb_000086_420 Hb_171900_090 Hb_171900_090 Hb_010775_030--Hb_171900_090 Hb_000088_270 Hb_000088_270 Hb_000008_420--Hb_000088_270 Hb_000008_420--Hb_012092_050 Hb_007257_060 Hb_007257_060 Hb_000008_420--Hb_007257_060 Hb_007423_050 Hb_007423_050 Hb_000008_420--Hb_007423_050 Hb_000920_300 Hb_000920_300 Hb_000008_420--Hb_000920_300 Hb_012092_050--Hb_007257_060 Hb_012092_050--Hb_002014_010 Hb_012092_050--Hb_001635_110 Hb_004109_320 Hb_004109_320 Hb_012092_050--Hb_004109_320 Hb_000000_230 Hb_000000_230 Hb_050847_050--Hb_000000_230 Hb_002471_090 Hb_002471_090 Hb_050847_050--Hb_002471_090 Hb_004781_010 Hb_004781_010 Hb_050847_050--Hb_004781_010 Hb_000510_340 Hb_000510_340 Hb_050847_050--Hb_000510_340 Hb_050847_050--Hb_007257_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.74316 13.5528 15.1086 9.84013 5.90021 6.51011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.62017 12.0558 5.45685 15.0305 9.32878

CAGE analysis