Hb_000000_230

Information

Type transcription factor
Description TF Family: LIM
Location Contig0: 443442-450717
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03930g
description hypothetical protein
nr
ID XP_012071765.1
description PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
swissprot
ID P0C7Q8
description Protein DA1 OS=Arabidopsis thaliana GN=DA1 PE=1 SV=1
trembl
ID A0A067L1U3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04380 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein da1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00053: 444560-446950 , PASA_asmbl_00054: 447014-448107 , PASA_asmbl_00055: 448281-450632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_230 0.0 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
2 Hb_050847_050 0.0767820167 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
3 Hb_006588_060 0.0894529522 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
4 Hb_000521_240 0.0935117311 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
5 Hb_000699_150 0.0954701043 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
6 Hb_000490_060 0.097352786 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
7 Hb_000086_420 0.0979664829 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
8 Hb_002203_030 0.0994646757 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
9 Hb_000398_100 0.0997342348 - - Uncharacterized protein isoform 2 [Theobroma cacao]
10 Hb_001439_230 0.1024139195 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
11 Hb_003528_050 0.1030692082 - - protein transporter, putative [Ricinus communis]
12 Hb_000684_040 0.1045083776 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
13 Hb_002471_090 0.1059868576 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
14 Hb_006970_050 0.1067120913 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
15 Hb_002126_030 0.1069626202 - - ferrochelatase, putative [Ricinus communis]
16 Hb_001635_190 0.1081533936 - - RNA m5u methyltransferase, putative [Ricinus communis]
17 Hb_000327_140 0.1097928682 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
18 Hb_000164_100 0.1112501562 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
19 Hb_000292_100 0.1149416642 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
20 Hb_000176_020 0.1151348007 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_230 Hb_000000_230 Hb_050847_050 Hb_050847_050 Hb_000000_230--Hb_050847_050 Hb_006588_060 Hb_006588_060 Hb_000000_230--Hb_006588_060 Hb_000521_240 Hb_000521_240 Hb_000000_230--Hb_000521_240 Hb_000699_150 Hb_000699_150 Hb_000000_230--Hb_000699_150 Hb_000490_060 Hb_000490_060 Hb_000000_230--Hb_000490_060 Hb_000086_420 Hb_000086_420 Hb_000000_230--Hb_000086_420 Hb_050847_050--Hb_006588_060 Hb_002471_090 Hb_002471_090 Hb_050847_050--Hb_002471_090 Hb_004781_010 Hb_004781_010 Hb_050847_050--Hb_004781_010 Hb_000510_340 Hb_000510_340 Hb_050847_050--Hb_000510_340 Hb_007257_060 Hb_007257_060 Hb_050847_050--Hb_007257_060 Hb_001300_280 Hb_001300_280 Hb_006588_060--Hb_001300_280 Hb_008114_040 Hb_008114_040 Hb_006588_060--Hb_008114_040 Hb_010775_030 Hb_010775_030 Hb_006588_060--Hb_010775_030 Hb_000008_420 Hb_000008_420 Hb_006588_060--Hb_000008_420 Hb_012092_050 Hb_012092_050 Hb_006588_060--Hb_012092_050 Hb_001635_190 Hb_001635_190 Hb_000521_240--Hb_001635_190 Hb_000521_240--Hb_002471_090 Hb_000917_230 Hb_000917_230 Hb_000521_240--Hb_000917_230 Hb_001716_040 Hb_001716_040 Hb_000521_240--Hb_001716_040 Hb_010068_080 Hb_010068_080 Hb_000521_240--Hb_010068_080 Hb_011218_090 Hb_011218_090 Hb_000521_240--Hb_011218_090 Hb_183433_010 Hb_183433_010 Hb_000699_150--Hb_183433_010 Hb_004333_040 Hb_004333_040 Hb_000699_150--Hb_004333_040 Hb_007472_070 Hb_007472_070 Hb_000699_150--Hb_007472_070 Hb_003098_070 Hb_003098_070 Hb_000699_150--Hb_003098_070 Hb_000365_230 Hb_000365_230 Hb_000699_150--Hb_000365_230 Hb_000176_020 Hb_000176_020 Hb_000699_150--Hb_000176_020 Hb_000684_040 Hb_000684_040 Hb_000490_060--Hb_000684_040 Hb_003528_050 Hb_003528_050 Hb_000490_060--Hb_003528_050 Hb_020178_040 Hb_020178_040 Hb_000490_060--Hb_020178_040 Hb_006970_050 Hb_006970_050 Hb_000490_060--Hb_006970_050 Hb_003228_110 Hb_003228_110 Hb_000490_060--Hb_003228_110 Hb_000490_060--Hb_050847_050 Hb_000327_140 Hb_000327_140 Hb_000086_420--Hb_000327_140 Hb_000029_060 Hb_000029_060 Hb_000086_420--Hb_000029_060 Hb_012239_020 Hb_012239_020 Hb_000086_420--Hb_012239_020 Hb_004994_240 Hb_004994_240 Hb_000086_420--Hb_004994_240 Hb_000292_100 Hb_000292_100 Hb_000086_420--Hb_000292_100 Hb_000738_020 Hb_000738_020 Hb_000086_420--Hb_000738_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39069 10.2693 8.34845 5.21085 1.93028 3.31513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1874 7.99282 4.39868 8.37598 7.00975

CAGE analysis