Hb_000684_040

Information

Type -
Description -
Location Contig684: 108239-117678
Sequence    

Annotation

kegg
ID rcu:RCOM_1357410
description protein binding protein, putative
nr
ID XP_012082323.1
description PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
swissprot
ID O49500
description E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana GN=MBR2 PE=1 SV=1
trembl
ID A0A067K206
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16487 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase mbr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53954: 110703-117581 , PASA_asmbl_53955: 109679-110176 , PASA_asmbl_53956: 108427-117581 , PASA_asmbl_53957: 109742-110576 , PASA_asmbl_53958: 115140-117581 , PASA_asmbl_53960: 108427-110657 , PASA_asmbl_53961: 108772-108963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_040 0.0 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
2 Hb_000490_060 0.07385314 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
3 Hb_000347_450 0.075943096 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
4 Hb_002471_090 0.0862798216 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
5 Hb_000723_230 0.0868389126 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
6 Hb_010775_040 0.0884914112 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
7 Hb_002477_290 0.0899855733 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
8 Hb_006637_030 0.0908209073 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
9 Hb_003376_180 0.0917859466 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
10 Hb_172426_030 0.0919829472 - - acetylglucosaminyltransferase, putative [Ricinus communis]
11 Hb_023771_010 0.0949136106 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
12 Hb_002811_100 0.0959918754 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
13 Hb_006970_050 0.0973592122 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
14 Hb_000521_240 0.097882779 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
15 Hb_001728_040 0.0980104367 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
16 Hb_002303_020 0.0980985136 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
17 Hb_007218_120 0.0981337213 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
18 Hb_002232_430 0.0986736234 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
19 Hb_050847_050 0.0990757506 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
20 Hb_000251_030 0.1002979797 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000684_040 Hb_000684_040 Hb_000490_060 Hb_000490_060 Hb_000684_040--Hb_000490_060 Hb_000347_450 Hb_000347_450 Hb_000684_040--Hb_000347_450 Hb_002471_090 Hb_002471_090 Hb_000684_040--Hb_002471_090 Hb_000723_230 Hb_000723_230 Hb_000684_040--Hb_000723_230 Hb_010775_040 Hb_010775_040 Hb_000684_040--Hb_010775_040 Hb_002477_290 Hb_002477_290 Hb_000684_040--Hb_002477_290 Hb_003528_050 Hb_003528_050 Hb_000490_060--Hb_003528_050 Hb_020178_040 Hb_020178_040 Hb_000490_060--Hb_020178_040 Hb_006970_050 Hb_006970_050 Hb_000490_060--Hb_006970_050 Hb_003228_110 Hb_003228_110 Hb_000490_060--Hb_003228_110 Hb_050847_050 Hb_050847_050 Hb_000490_060--Hb_050847_050 Hb_011224_160 Hb_011224_160 Hb_000347_450--Hb_011224_160 Hb_000088_270 Hb_000088_270 Hb_000347_450--Hb_000088_270 Hb_000347_450--Hb_050847_050 Hb_000347_450--Hb_010775_040 Hb_000183_090 Hb_000183_090 Hb_000347_450--Hb_000183_090 Hb_000521_240 Hb_000521_240 Hb_002471_090--Hb_000521_240 Hb_189216_010 Hb_189216_010 Hb_002471_090--Hb_189216_010 Hb_001635_190 Hb_001635_190 Hb_002471_090--Hb_001635_190 Hb_000778_010 Hb_000778_010 Hb_002471_090--Hb_000778_010 Hb_011218_090 Hb_011218_090 Hb_002471_090--Hb_011218_090 Hb_002471_090--Hb_020178_040 Hb_006637_030 Hb_006637_030 Hb_000723_230--Hb_006637_030 Hb_005653_070 Hb_005653_070 Hb_000723_230--Hb_005653_070 Hb_001728_040 Hb_001728_040 Hb_000723_230--Hb_001728_040 Hb_000465_300 Hb_000465_300 Hb_000723_230--Hb_000465_300 Hb_006060_020 Hb_006060_020 Hb_000723_230--Hb_006060_020 Hb_023771_010 Hb_023771_010 Hb_010775_040--Hb_023771_010 Hb_004781_010 Hb_004781_010 Hb_010775_040--Hb_004781_010 Hb_000917_230 Hb_000917_230 Hb_010775_040--Hb_000917_230 Hb_002811_100 Hb_002811_100 Hb_010775_040--Hb_002811_100 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002660_170 Hb_002660_170 Hb_002477_290--Hb_002660_170 Hb_007218_120 Hb_007218_120 Hb_002477_290--Hb_007218_120 Hb_000251_030 Hb_000251_030 Hb_002477_290--Hb_000251_030 Hb_006059_010 Hb_006059_010 Hb_002477_290--Hb_006059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32499 20.8108 16.0469 21.4539 6.64363 6.3787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0996 21.5691 14.3737 24.7481 17.9817

CAGE analysis