Hb_007218_120

Information

Type -
Description -
Location Contig7218: 120137-145977
Sequence    

Annotation

kegg
ID pop:POPTR_0013s09950g
description hypothetical protein
nr
ID XP_012069061.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZU27
description Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1
trembl
ID U5FUU4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s09950g PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55679: 120292-125661 , PASA_asmbl_55680: 126733-129945 , PASA_asmbl_55681: 130089-130284 , PASA_asmbl_55683: 135055-135990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007218_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
2 Hb_002119_130 0.0491706318 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
3 Hb_000173_410 0.0674503439 - - PREDICTED: BI1-like protein [Jatropha curcas]
4 Hb_002660_170 0.0676461242 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
5 Hb_000110_140 0.0725906702 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
6 Hb_003360_040 0.0733581485 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
7 Hb_003376_180 0.0747669543 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
8 Hb_000454_090 0.0748575307 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
9 Hb_000252_100 0.0772806068 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
10 Hb_005653_070 0.07788168 - - K+ transport growth defect-like protein [Hevea brasiliensis]
11 Hb_002477_290 0.0787358318 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
12 Hb_011218_090 0.0797476911 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
13 Hb_000029_140 0.0811075523 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
14 Hb_001218_030 0.0817229031 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
15 Hb_006059_010 0.0828840283 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
16 Hb_149985_010 0.0833063142 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
17 Hb_000359_060 0.0849624497 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
18 Hb_000920_200 0.0854570542 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
19 Hb_011344_190 0.0855256472 - - PREDICTED: maspardin [Jatropha curcas]
20 Hb_000964_030 0.0871195722 - - ADP/ATP carrier 2 [Theobroma cacao]

Gene co-expression network

sample Hb_007218_120 Hb_007218_120 Hb_002119_130 Hb_002119_130 Hb_007218_120--Hb_002119_130 Hb_000173_410 Hb_000173_410 Hb_007218_120--Hb_000173_410 Hb_002660_170 Hb_002660_170 Hb_007218_120--Hb_002660_170 Hb_000110_140 Hb_000110_140 Hb_007218_120--Hb_000110_140 Hb_003360_040 Hb_003360_040 Hb_007218_120--Hb_003360_040 Hb_003376_180 Hb_003376_180 Hb_007218_120--Hb_003376_180 Hb_002119_130--Hb_003360_040 Hb_000920_200 Hb_000920_200 Hb_002119_130--Hb_000920_200 Hb_001218_030 Hb_001218_030 Hb_002119_130--Hb_001218_030 Hb_002119_130--Hb_000173_410 Hb_000454_090 Hb_000454_090 Hb_002119_130--Hb_000454_090 Hb_000173_410--Hb_000454_090 Hb_000252_100 Hb_000252_100 Hb_000173_410--Hb_000252_100 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_004078_040 Hb_004078_040 Hb_000173_410--Hb_004078_040 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_006059_010 Hb_006059_010 Hb_002660_170--Hb_006059_010 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290 Hb_000061_230 Hb_000061_230 Hb_000110_140--Hb_000061_230 Hb_000110_140--Hb_003376_180 Hb_000110_140--Hb_000454_090 Hb_000173_470 Hb_000173_470 Hb_000110_140--Hb_000173_470 Hb_000110_140--Hb_002660_170 Hb_003360_040--Hb_000454_090 Hb_003360_040--Hb_000920_200 Hb_001019_100 Hb_001019_100 Hb_003360_040--Hb_001019_100 Hb_000140_090 Hb_000140_090 Hb_003360_040--Hb_000140_090 Hb_003376_180--Hb_002477_290 Hb_005653_070 Hb_005653_070 Hb_003376_180--Hb_005653_070 Hb_003376_180--Hb_002660_170 Hb_001728_040 Hb_001728_040 Hb_003376_180--Hb_001728_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.7468 6.34525 6.92286 11.1668 3.27481 3.55167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.49004 10.5095 10.4477 10.4438 8.54678

CAGE analysis