Hb_000252_100

Information

Type -
Description -
Location Contig252: 79743-91546
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05470g
description POPTRDRAFT_726254; clathrin adaptor complexes medium subunit family protein
nr
ID XP_012085460.1
description PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
swissprot
ID O22715
description AP-1 complex subunit mu-2 OS=Arabidopsis thaliana GN=AP1M2 PE=1 SV=1
trembl
ID A0A067K318
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17798 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-1 complex subunit mu-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26359: 86729-91346 , PASA_asmbl_26360: 89221-89362
cDNA
(Sanger)
(ID:Location)		 009_G15.ab1: 90203-91346

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_100 0.0 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
2 Hb_000454_090 0.0427061091 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
3 Hb_000173_410 0.0455831668 - - PREDICTED: BI1-like protein [Jatropha curcas]
4 Hb_003305_040 0.067262291 - - AP47/50p mRNA family protein [Populus trichocarpa]
5 Hb_000140_380 0.0694803675 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
6 Hb_000060_050 0.0760272907 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
7 Hb_000505_150 0.0766337634 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
8 Hb_007218_120 0.0772806068 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
9 Hb_004800_100 0.0775322698 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000220_100 0.0799860697 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
11 Hb_007386_040 0.0816538447 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
12 Hb_000964_030 0.0839907002 - - ADP/ATP carrier 2 [Theobroma cacao]
13 Hb_005765_050 0.0843268632 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
14 Hb_002119_130 0.0859695678 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
15 Hb_000359_060 0.0861232096 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
16 Hb_000212_450 0.0878196521 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
17 Hb_000521_130 0.0895781923 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
18 Hb_004078_040 0.0905843066 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
19 Hb_002660_170 0.0944771858 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
20 Hb_011861_100 0.0953867953 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000252_100 Hb_000252_100 Hb_000454_090 Hb_000454_090 Hb_000252_100--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_000454_090--Hb_000173_410 Hb_004078_040 Hb_004078_040 Hb_000454_090--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_005765_050 Hb_005765_050 Hb_000454_090--Hb_005765_050 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_000173_410--Hb_005765_050 Hb_000173_410--Hb_004078_040 Hb_003305_040--Hb_000060_050 Hb_002110_100 Hb_002110_100 Hb_003305_040--Hb_002110_100 Hb_003305_040--Hb_000454_090 Hb_003305_040--Hb_000173_410 Hb_005601_040 Hb_005601_040 Hb_003305_040--Hb_005601_040 Hb_000140_380--Hb_004078_040 Hb_000787_020 Hb_000787_020 Hb_000140_380--Hb_000787_020 Hb_000140_380--Hb_000173_410 Hb_000890_150 Hb_000890_150 Hb_000140_380--Hb_000890_150 Hb_000140_380--Hb_000454_090 Hb_001489_110 Hb_001489_110 Hb_000060_050--Hb_001489_110 Hb_002660_170 Hb_002660_170 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000060_050--Hb_000173_410 Hb_000505_150--Hb_000140_380 Hb_010344_050 Hb_010344_050 Hb_000505_150--Hb_010344_050 Hb_007386_040 Hb_007386_040 Hb_000505_150--Hb_007386_040 Hb_000853_200 Hb_000853_200 Hb_000505_150--Hb_000853_200 Hb_001898_080 Hb_001898_080 Hb_000505_150--Hb_001898_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36001 8.94784 10.9942 23.7614 5.68123 6.23615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6154 14.0809 21.6426 14.075 12.1133

CAGE analysis