Hb_000853_200

Information

Type -
Description -
Location Contig853: 162607-167389
Sequence    

Annotation

kegg
ID cit:102619406
description hypothetical protein
nr
ID XP_012082830.1
description PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9RKK7
description Uncharacterized protein OS=Morus notabilis GN=L484_007474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60484: 162658-163615 , PASA_asmbl_60485: 166884-167289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_200 0.0 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
2 Hb_000477_100 0.082967383 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
3 Hb_000505_150 0.0836513733 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
4 Hb_008748_030 0.0842048294 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000748_030 0.0850222351 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000012_310 0.0881780002 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
7 Hb_007416_210 0.0892333755 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
8 Hb_000023_300 0.0928159666 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
9 Hb_004137_020 0.0951588526 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Jatropha curcas]
10 Hb_000109_180 0.0960889476 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
11 Hb_007386_040 0.0988334241 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
12 Hb_001500_100 0.0993029047 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003097_140 0.0997647155 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
14 Hb_000322_080 0.0998443401 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
15 Hb_001842_010 0.1002704219 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_000046_500 0.101848566 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
17 Hb_000227_160 0.1028741659 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
18 Hb_000917_130 0.1046607064 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
19 Hb_028928_010 0.1051930367 - - hypothetical protein CISIN_1g0030132mg, partial [Citrus sinensis]
20 Hb_103684_010 0.1053298943 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000853_200 Hb_000853_200 Hb_000477_100 Hb_000477_100 Hb_000853_200--Hb_000477_100 Hb_000505_150 Hb_000505_150 Hb_000853_200--Hb_000505_150 Hb_008748_030 Hb_008748_030 Hb_000853_200--Hb_008748_030 Hb_000748_030 Hb_000748_030 Hb_000853_200--Hb_000748_030 Hb_000012_310 Hb_000012_310 Hb_000853_200--Hb_000012_310 Hb_007416_210 Hb_007416_210 Hb_000853_200--Hb_007416_210 Hb_007481_010 Hb_007481_010 Hb_000477_100--Hb_007481_010 Hb_000046_500 Hb_000046_500 Hb_000477_100--Hb_000046_500 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_000252_100 Hb_000252_100 Hb_000505_150--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000505_150--Hb_000140_380 Hb_010344_050 Hb_010344_050 Hb_000505_150--Hb_010344_050 Hb_007386_040 Hb_007386_040 Hb_000505_150--Hb_007386_040 Hb_001898_080 Hb_001898_080 Hb_000505_150--Hb_001898_080 Hb_000227_160 Hb_000227_160 Hb_008748_030--Hb_000227_160 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_000748_030--Hb_000477_100 Hb_001454_230 Hb_001454_230 Hb_000748_030--Hb_001454_230 Hb_004137_020 Hb_004137_020 Hb_000748_030--Hb_004137_020 Hb_003305_040 Hb_003305_040 Hb_000748_030--Hb_003305_040 Hb_003529_030 Hb_003529_030 Hb_000748_030--Hb_003529_030 Hb_000012_310--Hb_006452_120 Hb_001789_150 Hb_001789_150 Hb_000012_310--Hb_001789_150 Hb_006059_010 Hb_006059_010 Hb_000012_310--Hb_006059_010 Hb_000012_310--Hb_000574_450 Hb_002660_170 Hb_002660_170 Hb_000012_310--Hb_002660_170 Hb_000390_050 Hb_000390_050 Hb_007416_210--Hb_000390_050 Hb_007416_210--Hb_003097_140 Hb_003994_220 Hb_003994_220 Hb_007416_210--Hb_003994_220 Hb_043792_040 Hb_043792_040 Hb_007416_210--Hb_043792_040 Hb_007765_040 Hb_007765_040 Hb_007416_210--Hb_007765_040 Hb_003340_010 Hb_003340_010 Hb_007416_210--Hb_003340_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.447613 0.533757 0.511315 1.35217 0.29284 0.431987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.318622 0.429624 0.927577 0.862148 0.736747

CAGE analysis