Hb_000390_050

Information

Type -
Description -
Location Contig390: 65003-71909
Sequence    

Annotation

kegg
ID pxb:103951479
description GPCR-type G protein 1
nr
ID XP_012070258.1
description PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
swissprot
ID Q7X7S8
description GPCR-type G protein COLD1 OS=Oryza sativa subsp. japonica GN=COLD1 PE=1 SV=2
trembl
ID A0A067KX23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02568 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39074: 47017-71729 , PASA_asmbl_39075: 67783-68199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_050 0.0 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
2 Hb_007765_040 0.0505551898 - - Cytosolic enolase isoform 3 [Theobroma cacao]
3 Hb_000417_390 0.0716317938 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
4 Hb_003097_140 0.0723584711 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
5 Hb_007416_210 0.0726937277 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
6 Hb_002928_090 0.079232617 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
7 Hb_002902_130 0.0817191636 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
8 Hb_000014_040 0.0833682029 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003998_040 0.0870292102 - - organic anion transporter, putative [Ricinus communis]
10 Hb_003878_200 0.0882891449 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
11 Hb_074197_040 0.0894953512 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
12 Hb_001029_040 0.0903803069 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
13 Hb_000389_030 0.0914444984 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
14 Hb_001946_180 0.0931876907 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005701_120 0.09403492 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
16 Hb_003994_220 0.0949033753 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
17 Hb_001703_050 0.0949282059 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
18 Hb_000701_030 0.0956498445 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
19 Hb_001157_230 0.0956746595 - - Protein AFR, putative [Ricinus communis]
20 Hb_000256_230 0.095909141 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_050 Hb_000390_050 Hb_007765_040 Hb_007765_040 Hb_000390_050--Hb_007765_040 Hb_000417_390 Hb_000417_390 Hb_000390_050--Hb_000417_390 Hb_003097_140 Hb_003097_140 Hb_000390_050--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_000390_050--Hb_007416_210 Hb_002928_090 Hb_002928_090 Hb_000390_050--Hb_002928_090 Hb_002902_130 Hb_002902_130 Hb_000390_050--Hb_002902_130 Hb_003998_040 Hb_003998_040 Hb_007765_040--Hb_003998_040 Hb_007765_040--Hb_003097_140 Hb_005218_020 Hb_005218_020 Hb_007765_040--Hb_005218_020 Hb_000066_030 Hb_000066_030 Hb_007765_040--Hb_000066_030 Hb_007765_040--Hb_007416_210 Hb_000585_110 Hb_000585_110 Hb_000417_390--Hb_000585_110 Hb_001080_300 Hb_001080_300 Hb_000417_390--Hb_001080_300 Hb_001029_040 Hb_001029_040 Hb_000417_390--Hb_001029_040 Hb_015884_020 Hb_015884_020 Hb_000417_390--Hb_015884_020 Hb_074197_040 Hb_074197_040 Hb_000417_390--Hb_074197_040 Hb_003994_220 Hb_003994_220 Hb_003097_140--Hb_003994_220 Hb_001440_020 Hb_001440_020 Hb_003097_140--Hb_001440_020 Hb_000477_100 Hb_000477_100 Hb_003097_140--Hb_000477_100 Hb_027445_020 Hb_027445_020 Hb_003097_140--Hb_027445_020 Hb_007416_210--Hb_003097_140 Hb_007416_210--Hb_003994_220 Hb_043792_040 Hb_043792_040 Hb_007416_210--Hb_043792_040 Hb_003340_010 Hb_003340_010 Hb_007416_210--Hb_003340_010 Hb_000014_040 Hb_000014_040 Hb_002928_090--Hb_000014_040 Hb_001242_120 Hb_001242_120 Hb_002928_090--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_002928_090--Hb_001051_050 Hb_005725_130 Hb_005725_130 Hb_002928_090--Hb_005725_130 Hb_009569_040 Hb_009569_040 Hb_002928_090--Hb_009569_040 Hb_003988_050 Hb_003988_050 Hb_002902_130--Hb_003988_050 Hb_002902_130--Hb_003097_140 Hb_000365_400 Hb_000365_400 Hb_002902_130--Hb_000365_400 Hb_001703_050 Hb_001703_050 Hb_002902_130--Hb_001703_050 Hb_000389_030 Hb_000389_030 Hb_002902_130--Hb_000389_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33629 1.80431 2.91784 7.04737 2.17076 2.14027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4166 1.83877 2.44921 3.19674 5.1042

CAGE analysis