Hb_001051_050

Information

Type -
Description -
Location Contig1051: 84395-91193
Sequence    

Annotation

kegg
ID rcu:RCOM_0034350
description hypothetical protein
nr
ID XP_002529935.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVB6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0034350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01724: 84589-91129 , PASA_asmbl_01725: 84603-91129 , PASA_asmbl_01726: 84589-88013 , PASA_asmbl_01727: 88027-91193 , PASA_asmbl_01728: 88027-91193
cDNA
(Sanger)
(ID:Location)		 004_K10.ab1: 84589-87907

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001051_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002928_090 0.0692198148 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
3 Hb_000014_040 0.0761897993 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001242_120 0.0797923723 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
5 Hb_000116_190 0.0801806839 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000645_280 0.0844472797 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
7 Hb_007821_030 0.0900422054 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
8 Hb_109000_020 0.0949753858 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
9 Hb_170138_010 0.0951011996 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003878_150 0.0970330321 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
11 Hb_002774_190 0.0996553624 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
12 Hb_000638_070 0.1000932806 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
13 Hb_000684_210 0.1001761567 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
14 Hb_005800_030 0.1004320517 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
15 Hb_000903_010 0.1009801575 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
16 Hb_028487_070 0.1020608626 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000212_120 0.1024840758 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
18 Hb_003878_200 0.1030631664 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
19 Hb_000061_180 0.1034204926 - - exonuclease, putative [Ricinus communis]
20 Hb_001157_230 0.1038862287 - - Protein AFR, putative [Ricinus communis]

Gene co-expression network

sample Hb_001051_050 Hb_001051_050 Hb_002928_090 Hb_002928_090 Hb_001051_050--Hb_002928_090 Hb_000014_040 Hb_000014_040 Hb_001051_050--Hb_000014_040 Hb_001242_120 Hb_001242_120 Hb_001051_050--Hb_001242_120 Hb_000116_190 Hb_000116_190 Hb_001051_050--Hb_000116_190 Hb_000645_280 Hb_000645_280 Hb_001051_050--Hb_000645_280 Hb_007821_030 Hb_007821_030 Hb_001051_050--Hb_007821_030 Hb_002928_090--Hb_000014_040 Hb_002928_090--Hb_001242_120 Hb_005725_130 Hb_005725_130 Hb_002928_090--Hb_005725_130 Hb_000390_050 Hb_000390_050 Hb_002928_090--Hb_000390_050 Hb_009569_040 Hb_009569_040 Hb_002928_090--Hb_009569_040 Hb_000014_040--Hb_000390_050 Hb_170138_010 Hb_170138_010 Hb_000014_040--Hb_170138_010 Hb_000399_060 Hb_000399_060 Hb_000014_040--Hb_000399_060 Hb_000684_210 Hb_000684_210 Hb_000014_040--Hb_000684_210 Hb_012733_040 Hb_012733_040 Hb_001242_120--Hb_012733_040 Hb_001242_120--Hb_005725_130 Hb_002301_100 Hb_002301_100 Hb_001242_120--Hb_002301_100 Hb_003878_150 Hb_003878_150 Hb_001242_120--Hb_003878_150 Hb_002871_140 Hb_002871_140 Hb_000116_190--Hb_002871_140 Hb_000903_010 Hb_000903_010 Hb_000116_190--Hb_000903_010 Hb_009524_030 Hb_009524_030 Hb_000116_190--Hb_009524_030 Hb_002774_190 Hb_002774_190 Hb_000116_190--Hb_002774_190 Hb_000116_190--Hb_001242_120 Hb_028487_070 Hb_028487_070 Hb_000645_280--Hb_028487_070 Hb_000645_280--Hb_000684_210 Hb_002232_390 Hb_002232_390 Hb_000645_280--Hb_002232_390 Hb_001347_060 Hb_001347_060 Hb_000645_280--Hb_001347_060 Hb_005800_030 Hb_005800_030 Hb_000645_280--Hb_005800_030 Hb_002173_070 Hb_002173_070 Hb_007821_030--Hb_002173_070 Hb_005288_130 Hb_005288_130 Hb_007821_030--Hb_005288_130 Hb_007821_030--Hb_003878_150 Hb_000035_260 Hb_000035_260 Hb_007821_030--Hb_000035_260 Hb_000061_180 Hb_000061_180 Hb_007821_030--Hb_000061_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.24284 3.12761 10.4331 15.4572 6.54705 7.82339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.74787 7.99692 4.80085 8.18725 15.6171

CAGE analysis