Hb_005800_030

Information

Type -
Description -
Location Contig5800: 22866-32668
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03350g
description POPTRDRAFT_422780; hypothetical protein
nr
ID XP_012079332.1
description PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
swissprot
ID Q96S90
description LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Homo sapiens GN=LYSMD1 PE=1 SV=1
trembl
ID A0A067LBP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17414 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49859: 22871-32793 , PASA_asmbl_49860: 30015-30253 , PASA_asmbl_49861: 30424-30731
cDNA
(Sanger)
(ID:Location)		 026_L21.ab1: 22871-23147

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005800_030 0.0 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
2 Hb_133702_010 0.0512228688 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_004545_110 0.0669871313 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
4 Hb_002820_020 0.0693858971 - - hypothetical protein VITISV_005587 [Vitis vinifera]
5 Hb_003878_150 0.075227099 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
6 Hb_004452_120 0.0763975984 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
7 Hb_000061_180 0.0782480321 - - exonuclease, putative [Ricinus communis]
8 Hb_000080_130 0.0787422696 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
9 Hb_007975_060 0.0806442288 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
10 Hb_001232_190 0.0808383899 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
11 Hb_000721_030 0.0819398276 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
12 Hb_004754_050 0.082182381 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
13 Hb_109000_020 0.0824104719 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
14 Hb_015675_040 0.083468669 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
15 Hb_185255_010 0.0834787917 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
16 Hb_000172_580 0.0839526947 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000023_260 0.0840211276 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
18 Hb_006683_070 0.0854083349 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
19 Hb_005976_080 0.08832112 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
20 Hb_000579_120 0.0896293219 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]

Gene co-expression network

sample Hb_005800_030 Hb_005800_030 Hb_133702_010 Hb_133702_010 Hb_005800_030--Hb_133702_010 Hb_004545_110 Hb_004545_110 Hb_005800_030--Hb_004545_110 Hb_002820_020 Hb_002820_020 Hb_005800_030--Hb_002820_020 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_004452_120 Hb_004452_120 Hb_005800_030--Hb_004452_120 Hb_000061_180 Hb_000061_180 Hb_005800_030--Hb_000061_180 Hb_133702_010--Hb_004452_120 Hb_133702_010--Hb_004545_110 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_007975_060 Hb_007975_060 Hb_133702_010--Hb_007975_060 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_000080_130 Hb_000080_130 Hb_004545_110--Hb_000080_130 Hb_008616_050 Hb_008616_050 Hb_004545_110--Hb_008616_050 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_000179_270 Hb_000179_270 Hb_002820_020--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_002820_020--Hb_000087_070 Hb_002820_020--Hb_000347_240 Hb_185255_010 Hb_185255_010 Hb_002820_020--Hb_185255_010 Hb_001189_070 Hb_001189_070 Hb_002820_020--Hb_001189_070 Hb_109000_020 Hb_109000_020 Hb_003878_150--Hb_109000_020 Hb_005725_130 Hb_005725_130 Hb_003878_150--Hb_005725_130 Hb_001662_100 Hb_001662_100 Hb_003878_150--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_003878_150--Hb_000256_150 Hb_003883_060 Hb_003883_060 Hb_003878_150--Hb_003883_060 Hb_001195_400 Hb_001195_400 Hb_003878_150--Hb_001195_400 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_010863_050 Hb_010863_050 Hb_004452_120--Hb_010863_050 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050 Hb_004452_120--Hb_000061_180 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020 Hb_000375_390 Hb_000375_390 Hb_000061_180--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_000061_180--Hb_000023_260 Hb_000061_180--Hb_007975_060 Hb_000061_180--Hb_133702_010 Hb_002157_120 Hb_002157_120 Hb_000061_180--Hb_002157_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.01167 2.85787 6.44659 9.82616 4.25043 4.23472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.97972 6.88471 4.58042 4.89693 9.52895

CAGE analysis