Hb_000347_240

Information

Type -
Description -
Location Contig347: 255281-264576
Sequence    

Annotation

kegg
ID pxb:103936360
description proteasome subunit alpha type-6
nr
ID XP_009344472.1
description PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
swissprot
ID O48551
description Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2
trembl
ID B9T3A4
description Proteasome subunit alpha type OS=Ricinus communis GN=RCOM_0391800 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36214: 255330-264513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_240 0.0 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
2 Hb_001189_070 0.0619661777 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
3 Hb_000483_300 0.0619812344 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
4 Hb_004545_110 0.0639487286 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
5 Hb_001489_090 0.0670458344 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
6 Hb_006573_190 0.0683921151 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
7 Hb_000566_120 0.0748064505 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
8 Hb_023371_020 0.0771141496 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
9 Hb_000666_100 0.0773696255 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
10 Hb_004157_050 0.0785150651 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
11 Hb_000069_720 0.0789147623 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
12 Hb_000045_310 0.0803792477 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
13 Hb_011344_120 0.0805460484 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
14 Hb_000310_090 0.0831809239 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
15 Hb_003465_030 0.0841728032 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000390_300 0.0845898565 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
17 Hb_002820_020 0.0847336508 - - hypothetical protein VITISV_005587 [Vitis vinifera]
18 Hb_001828_150 0.0849409861 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
19 Hb_008841_020 0.0854137132 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
20 Hb_185255_010 0.0860922713 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000347_240 Hb_000347_240 Hb_001189_070 Hb_001189_070 Hb_000347_240--Hb_001189_070 Hb_000483_300 Hb_000483_300 Hb_000347_240--Hb_000483_300 Hb_004545_110 Hb_004545_110 Hb_000347_240--Hb_004545_110 Hb_001489_090 Hb_001489_090 Hb_000347_240--Hb_001489_090 Hb_006573_190 Hb_006573_190 Hb_000347_240--Hb_006573_190 Hb_000566_120 Hb_000566_120 Hb_000347_240--Hb_000566_120 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050 Hb_000483_300--Hb_001189_070 Hb_004157_050 Hb_004157_050 Hb_000483_300--Hb_004157_050 Hb_001366_180 Hb_001366_180 Hb_000483_300--Hb_001366_180 Hb_023371_020 Hb_023371_020 Hb_000483_300--Hb_023371_020 Hb_000053_020 Hb_000053_020 Hb_000483_300--Hb_000053_020 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_000080_130 Hb_000080_130 Hb_004545_110--Hb_000080_130 Hb_008616_050 Hb_008616_050 Hb_004545_110--Hb_008616_050 Hb_133702_010 Hb_133702_010 Hb_004545_110--Hb_133702_010 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030 Hb_003465_030 Hb_003465_030 Hb_001489_090--Hb_003465_030 Hb_001195_200 Hb_001195_200 Hb_001489_090--Hb_001195_200 Hb_000948_160 Hb_000948_160 Hb_001489_090--Hb_000948_160 Hb_008453_030 Hb_008453_030 Hb_001489_090--Hb_008453_030 Hb_004586_420 Hb_004586_420 Hb_001489_090--Hb_004586_420 Hb_006573_190--Hb_000566_120 Hb_000003_230 Hb_000003_230 Hb_006573_190--Hb_000003_230 Hb_006573_190--Hb_004586_420 Hb_003582_060 Hb_003582_060 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150 Hb_000390_300 Hb_000390_300 Hb_006573_190--Hb_000390_300 Hb_000045_310 Hb_000045_310 Hb_000566_120--Hb_000045_310 Hb_001931_010 Hb_001931_010 Hb_000566_120--Hb_001931_010 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000566_120--Hb_000390_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65729 5.43155 8.49563 13.7242 7.86061 6.71372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4006 14.3035 9.42063 9.45985 10.8689

CAGE analysis