Hb_006573_190

Information

Type -
Description -
Location Contig6573: 130464-132398
Sequence    

Annotation

kegg
ID rcu:RCOM_1581930
description NADH dehydrogenase, putative (EC:1.6.5.3)
nr
ID XP_012090165.1
description PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
swissprot
ID Q9FLX7
description Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1
trembl
ID B9RIR5
description NADH dehydrogenase, putative OS=Ricinus communis GN=RCOM_1581930 PE=4 SV=1
Gene Ontology
ID GO:0005743
description probable nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52821: 130464-132580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_190 0.0 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
2 Hb_000566_120 0.0534554127 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
3 Hb_000003_230 0.0577572943 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
4 Hb_004586_420 0.0586264692 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
5 Hb_003582_060 0.0596368082 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
6 Hb_001828_150 0.0610115034 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
7 Hb_000390_300 0.0629783316 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
8 Hb_000045_310 0.0639296365 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
9 Hb_001931_010 0.064362311 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
10 Hb_002681_100 0.0674212745 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
11 Hb_000347_240 0.0683921151 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
12 Hb_006615_240 0.0686065066 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
13 Hb_007676_080 0.0693698248 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
14 Hb_000920_200 0.0696975647 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
15 Hb_000431_170 0.0698355694 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
16 Hb_028396_010 0.0722981439 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
17 Hb_001341_150 0.0723623889 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
18 Hb_014720_110 0.0725203672 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
19 Hb_008841_020 0.0728320706 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
20 Hb_001189_070 0.0740616211 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006573_190 Hb_006573_190 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_000003_230 Hb_000003_230 Hb_006573_190--Hb_000003_230 Hb_004586_420 Hb_004586_420 Hb_006573_190--Hb_004586_420 Hb_003582_060 Hb_003582_060 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150 Hb_000390_300 Hb_000390_300 Hb_006573_190--Hb_000390_300 Hb_000045_310 Hb_000045_310 Hb_000566_120--Hb_000045_310 Hb_001931_010 Hb_001931_010 Hb_000566_120--Hb_001931_010 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000566_120--Hb_000390_300 Hb_007676_080 Hb_007676_080 Hb_000003_230--Hb_007676_080 Hb_003304_020 Hb_003304_020 Hb_000003_230--Hb_003304_020 Hb_000003_230--Hb_003582_060 Hb_006615_240 Hb_006615_240 Hb_000003_230--Hb_006615_240 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030 Hb_004586_420--Hb_000003_230 Hb_004586_420--Hb_007676_080 Hb_008494_100 Hb_008494_100 Hb_004586_420--Hb_008494_100 Hb_001489_090 Hb_001489_090 Hb_004586_420--Hb_001489_090 Hb_004586_420--Hb_000390_300 Hb_003582_060--Hb_006615_240 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_001218_030 Hb_001218_030 Hb_001828_150--Hb_001218_030 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_000853_150 Hb_000853_150 Hb_001828_150--Hb_000853_150 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120 Hb_000390_300--Hb_008494_100 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_000390_300--Hb_006615_240 Hb_000390_300--Hb_007676_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1365 24.8222 58.7489 63.5008 38.9964 33.2839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.5869 86.5179 55.2915 54.2891 47.0349

CAGE analysis