Hb_000853_150

Information

Type -
Description -
Location Contig853: 93414-105869
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20240g
description POPTRDRAFT_552480; Fumarate hydratase 1 family protein
nr
ID XP_007051016.1
description Fumarase 1 isoform 2 [Theobroma cacao]
swissprot
ID Q9FI53
description Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1
trembl
ID A0A061DYX0
description Fumarase 1 isoform 2 OS=Theobroma cacao GN=TCM_004729 PE=3 SV=1
Gene Ontology
ID GO:0045239
description fumarate hydratase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60472: 93487-102534
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000853_150 0.0 - - Fumarase 1 isoform 2 [Theobroma cacao]
2 Hb_003058_120 0.0478295712 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
3 Hb_001218_030 0.0543763462 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
4 Hb_005588_060 0.0661507545 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
5 Hb_001828_150 0.0686766712 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
6 Hb_000460_030 0.0688743552 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
7 Hb_000076_220 0.0690056726 - - thioredoxin domain-containing protein, putative [Ricinus communis]
8 Hb_023001_040 0.0707158026 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
9 Hb_002217_350 0.0712773609 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
10 Hb_000920_200 0.0748146159 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
11 Hb_000392_420 0.0753602337 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
12 Hb_002007_080 0.076055066 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
13 Hb_000381_120 0.077032197 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
14 Hb_000665_140 0.0771067786 - - PREDICTED: protein MEMO1 [Jatropha curcas]
15 Hb_001660_100 0.0779172394 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
16 Hb_000663_060 0.0784500683 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
17 Hb_000774_020 0.0800458801 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
18 Hb_000483_260 0.0800859392 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
19 Hb_004157_050 0.081826448 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
20 Hb_006573_190 0.0819510591 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000853_150 Hb_000853_150 Hb_003058_120 Hb_003058_120 Hb_000853_150--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000853_150--Hb_001218_030 Hb_005588_060 Hb_005588_060 Hb_000853_150--Hb_005588_060 Hb_001828_150 Hb_001828_150 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_000167_010 Hb_000167_010 Hb_003058_120--Hb_000167_010 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050 Hb_000920_200 Hb_000920_200 Hb_001218_030--Hb_000920_200 Hb_001218_030--Hb_001828_150 Hb_000200_020 Hb_000200_020 Hb_001218_030--Hb_000200_020 Hb_001123_040 Hb_001123_040 Hb_001218_030--Hb_001123_040 Hb_000483_260 Hb_000483_260 Hb_001218_030--Hb_000483_260 Hb_002936_010 Hb_002936_010 Hb_005588_060--Hb_002936_010 Hb_006570_080 Hb_006570_080 Hb_005588_060--Hb_006570_080 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_000173_280 Hb_000173_280 Hb_005588_060--Hb_000173_280 Hb_005588_060--Hb_023001_040 Hb_006573_190 Hb_006573_190 Hb_001828_150--Hb_006573_190 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_121729_010 Hb_121729_010 Hb_001828_150--Hb_121729_010 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120 Hb_000460_030--Hb_006570_080 Hb_000431_170 Hb_000431_170 Hb_000460_030--Hb_000431_170 Hb_003582_060 Hb_003582_060 Hb_000460_030--Hb_003582_060 Hb_000460_030--Hb_000483_260 Hb_000460_030--Hb_005588_060 Hb_008725_230 Hb_008725_230 Hb_000460_030--Hb_008725_230 Hb_000076_220--Hb_003058_120 Hb_000774_020 Hb_000774_020 Hb_000076_220--Hb_000774_020 Hb_006846_130 Hb_006846_130 Hb_000076_220--Hb_006846_130 Hb_000130_270 Hb_000130_270 Hb_000076_220--Hb_000130_270 Hb_000260_470 Hb_000260_470 Hb_000076_220--Hb_000260_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.76227 8.17805 16.5759 16.4546 6.97266 8.69503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7398 16.681 14.7832 19.2172 10.4562

CAGE analysis