Hb_000130_270

Information

Type -
Description -
Location Contig130: 228768-232702
Sequence    

Annotation

kegg
ID rcu:RCOM_1520380
description malate dehydrogenase, putative (EC:1.1.1.37)
nr
ID XP_012078553.1
description PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
swissprot
ID P17783
description Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1
trembl
ID A0A067KJQ5
description Malate dehydrogenase OS=Jatropha curcas GN=JCGZ_14703 PE=3 SV=1
Gene Ontology
ID GO:0030060
description malate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08921: 228839-232625
cDNA
(Sanger)
(ID:Location)		 053_E11.ab1: 228876-230179

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_270 0.0 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
2 Hb_032202_100 0.0722914061 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
3 Hb_161574_020 0.0771823376 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
4 Hb_163175_010 0.0774232369 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
5 Hb_006846_130 0.0788494511 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
6 Hb_000076_220 0.0800997353 - - thioredoxin domain-containing protein, putative [Ricinus communis]
7 Hb_000086_170 0.0822742533 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
8 Hb_003207_180 0.0829293711 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
9 Hb_005288_130 0.0835688146 - - protein with unknown function [Ricinus communis]
10 Hb_005588_060 0.0837626995 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
11 Hb_000300_260 0.084268184 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
12 Hb_000297_160 0.0844276925 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
13 Hb_001472_100 0.0862559009 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
14 Hb_000207_150 0.0865640932 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
15 Hb_000875_080 0.0870119238 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
16 Hb_000270_310 0.0877075669 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
17 Hb_002572_020 0.0884490451 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
18 Hb_002936_010 0.0887846785 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
19 Hb_000152_600 0.0894949592 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
20 Hb_124373_010 0.089502312 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000130_270 Hb_000130_270 Hb_032202_100 Hb_032202_100 Hb_000130_270--Hb_032202_100 Hb_161574_020 Hb_161574_020 Hb_000130_270--Hb_161574_020 Hb_163175_010 Hb_163175_010 Hb_000130_270--Hb_163175_010 Hb_006846_130 Hb_006846_130 Hb_000130_270--Hb_006846_130 Hb_000076_220 Hb_000076_220 Hb_000130_270--Hb_000076_220 Hb_000086_170 Hb_000086_170 Hb_000130_270--Hb_000086_170 Hb_000926_200 Hb_000926_200 Hb_032202_100--Hb_000926_200 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000035_160 Hb_000035_160 Hb_032202_100--Hb_000035_160 Hb_000946_090 Hb_000946_090 Hb_032202_100--Hb_000946_090 Hb_032202_100--Hb_161574_020 Hb_007878_010 Hb_007878_010 Hb_161574_020--Hb_007878_010 Hb_000270_310 Hb_000270_310 Hb_161574_020--Hb_000270_310 Hb_002171_060 Hb_002171_060 Hb_161574_020--Hb_002171_060 Hb_002641_060 Hb_002641_060 Hb_161574_020--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_161574_020--Hb_013575_010 Hb_001278_100 Hb_001278_100 Hb_161574_020--Hb_001278_100 Hb_164390_010 Hb_164390_010 Hb_163175_010--Hb_164390_010 Hb_171900_090 Hb_171900_090 Hb_163175_010--Hb_171900_090 Hb_000365_230 Hb_000365_230 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_002301_150 Hb_002301_150 Hb_006846_130--Hb_002301_150 Hb_006846_130--Hb_000076_220 Hb_006573_190 Hb_006573_190 Hb_006846_130--Hb_006573_190 Hb_003582_060 Hb_003582_060 Hb_006846_130--Hb_003582_060 Hb_001931_010 Hb_001931_010 Hb_006846_130--Hb_001931_010 Hb_003058_120 Hb_003058_120 Hb_000076_220--Hb_003058_120 Hb_000853_150 Hb_000853_150 Hb_000076_220--Hb_000853_150 Hb_000774_020 Hb_000774_020 Hb_000076_220--Hb_000774_020 Hb_000260_470 Hb_000260_470 Hb_000076_220--Hb_000260_470 Hb_000086_170--Hb_000270_310 Hb_004312_010 Hb_004312_010 Hb_000086_170--Hb_004312_010 Hb_000086_170--Hb_161574_020 Hb_014720_120 Hb_014720_120 Hb_000086_170--Hb_014720_120 Hb_000336_210 Hb_000336_210 Hb_000086_170--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000086_170--Hb_002272_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.8133 43.867 98.366 111.612 45.272 43.1051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.9455 90.3922 38.4456 66.1053 53.3146

CAGE analysis