Hb_161574_020

Information

Type -
Description -
Location Contig161574: 7544-11679
Sequence    

Annotation

kegg
ID pxb:103937083
description ubiquitin fusion degradation protein 1 homolog
nr
ID XP_012084433.1
description PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
swissprot
ID Q9ES53
description Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1
trembl
ID A0A067K748
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19639 PE=4 SV=1
Gene Ontology
ID GO:0006511
description ubiquitin fusion degradation protein 1 homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14477: 10398-10775 , PASA_asmbl_14479: 7544-11669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161574_020 0.0 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
2 Hb_007878_010 0.0356463264 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
3 Hb_000270_310 0.0584427489 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
4 Hb_002171_060 0.0616499738 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002641_060 0.0634686754 - - prefoldin subunit, putative [Ricinus communis]
6 Hb_013575_010 0.0674705932 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
7 Hb_001278_100 0.0681721941 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
8 Hb_000086_170 0.0685235528 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
9 Hb_017895_040 0.0712433681 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
10 Hb_000720_040 0.0733371864 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
11 Hb_003057_060 0.0743919318 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008616_050 0.0760305549 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
13 Hb_000948_230 0.0771044966 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000130_270 0.0771823376 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
15 Hb_002936_010 0.0794021799 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
16 Hb_032202_100 0.0798102575 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
17 Hb_001931_010 0.0798599623 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
18 Hb_002681_100 0.0809627465 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
19 Hb_154948_040 0.0811706518 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
20 Hb_000297_160 0.0816974609 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]

Gene co-expression network

sample Hb_161574_020 Hb_161574_020 Hb_007878_010 Hb_007878_010 Hb_161574_020--Hb_007878_010 Hb_000270_310 Hb_000270_310 Hb_161574_020--Hb_000270_310 Hb_002171_060 Hb_002171_060 Hb_161574_020--Hb_002171_060 Hb_002641_060 Hb_002641_060 Hb_161574_020--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_161574_020--Hb_013575_010 Hb_001278_100 Hb_001278_100 Hb_161574_020--Hb_001278_100 Hb_007878_010--Hb_002641_060 Hb_007878_010--Hb_002171_060 Hb_007878_010--Hb_001278_100 Hb_000720_040 Hb_000720_040 Hb_007878_010--Hb_000720_040 Hb_007878_010--Hb_000270_310 Hb_000270_310--Hb_001278_100 Hb_000086_170 Hb_000086_170 Hb_000270_310--Hb_000086_170 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_164010_040 Hb_164010_040 Hb_000270_310--Hb_164010_040 Hb_000261_160 Hb_000261_160 Hb_002171_060--Hb_000261_160 Hb_001931_010 Hb_001931_010 Hb_002171_060--Hb_001931_010 Hb_000390_300 Hb_000390_300 Hb_002171_060--Hb_000390_300 Hb_000005_090 Hb_000005_090 Hb_002171_060--Hb_000005_090 Hb_002641_060--Hb_013575_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350 Hb_003057_060 Hb_003057_060 Hb_013575_010--Hb_003057_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_013575_010--Hb_000375_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100 Hb_012022_040 Hb_012022_040 Hb_001278_100--Hb_012022_040 Hb_000032_380 Hb_000032_380 Hb_001278_100--Hb_000032_380 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_001278_100--Hb_000390_300 Hb_001278_100--Hb_164010_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.4839 54.8877 114.774 128.089 64.9927 80.5356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.181 147.796 71.4533 76.0726 61.718

CAGE analysis