Hb_000270_310

Information

Type -
Description -
Location Contig270: 235321-238780
Sequence    

Annotation

kegg
ID pop:POPTR_0015s07950g
description POPTRDRAFT_824629; type 2A protein phosphatase-2
nr
ID XP_011028671.1
description PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
swissprot
ID Q9ZSE4
description Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Hevea brasiliensis GN=PP2A PE=2 SV=1
trembl
ID B9IEI9
description Serine/threonine-protein phosphatase OS=Populus trichocarpa GN=POPTR_0015s07950g PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp2a catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28187: 235315-238722 , PASA_asmbl_28188: 235793-236043
cDNA
(Sanger)
(ID:Location)		 003_C01.ab1: 235315-238132

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_310 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
2 Hb_161574_020 0.0584427489 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
3 Hb_001278_100 0.0606473305 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
4 Hb_000086_170 0.0609586342 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
5 Hb_002936_010 0.0703172543 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
6 Hb_164010_040 0.0707091107 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_007878_010 0.0715525024 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
8 Hb_003861_060 0.0729355336 - - PREDICTED: treacle protein [Jatropha curcas]
9 Hb_014834_150 0.0742011548 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_062226_130 0.0743885389 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
11 Hb_171900_090 0.0748585949 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003647_140 0.0749485788 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
13 Hb_000336_210 0.0751729798 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
14 Hb_000297_160 0.076685202 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
15 Hb_000373_050 0.0767963057 - - PREDICTED: protein WHI3 [Jatropha curcas]
16 Hb_024958_010 0.0774030955 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
17 Hb_003938_090 0.077592901 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000905_110 0.077985402 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
19 Hb_164390_010 0.0782748405 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
20 Hb_003582_060 0.0792910903 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_310 Hb_000270_310 Hb_161574_020 Hb_161574_020 Hb_000270_310--Hb_161574_020 Hb_001278_100 Hb_001278_100 Hb_000270_310--Hb_001278_100 Hb_000086_170 Hb_000086_170 Hb_000270_310--Hb_000086_170 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_164010_040 Hb_164010_040 Hb_000270_310--Hb_164010_040 Hb_007878_010 Hb_007878_010 Hb_000270_310--Hb_007878_010 Hb_161574_020--Hb_007878_010 Hb_002171_060 Hb_002171_060 Hb_161574_020--Hb_002171_060 Hb_002641_060 Hb_002641_060 Hb_161574_020--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_161574_020--Hb_013575_010 Hb_161574_020--Hb_001278_100 Hb_012022_040 Hb_012022_040 Hb_001278_100--Hb_012022_040 Hb_000032_380 Hb_000032_380 Hb_001278_100--Hb_000032_380 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_001278_100--Hb_000390_300 Hb_001278_100--Hb_164010_040 Hb_004312_010 Hb_004312_010 Hb_000086_170--Hb_004312_010 Hb_000086_170--Hb_161574_020 Hb_014720_120 Hb_014720_120 Hb_000086_170--Hb_014720_120 Hb_000336_210 Hb_000336_210 Hb_000086_170--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000086_170--Hb_002272_050 Hb_024958_010 Hb_024958_010 Hb_002936_010--Hb_024958_010 Hb_006570_080 Hb_006570_080 Hb_002936_010--Hb_006570_080 Hb_001359_050 Hb_001359_050 Hb_002936_010--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_002936_010--Hb_005588_060 Hb_000720_040 Hb_000720_040 Hb_002936_010--Hb_000720_040 Hb_003994_230 Hb_003994_230 Hb_002936_010--Hb_003994_230 Hb_002754_010 Hb_002754_010 Hb_164010_040--Hb_002754_010 Hb_000869_080 Hb_000869_080 Hb_164010_040--Hb_000869_080 Hb_062226_130 Hb_062226_130 Hb_164010_040--Hb_062226_130 Hb_013358_040 Hb_013358_040 Hb_164010_040--Hb_013358_040 Hb_002073_200 Hb_002073_200 Hb_164010_040--Hb_002073_200 Hb_007878_010--Hb_002641_060 Hb_007878_010--Hb_002171_060 Hb_007878_010--Hb_001278_100 Hb_007878_010--Hb_000720_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4676 12.7804 19.2531 16.9566 11.1177 10.7991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3813 24.1897 11.0757 12.6542 10.6946

CAGE analysis