Hb_001278_100

Information

Type -
Description -
Location Contig1278: 121754-125309
Sequence    

Annotation

kegg
ID rcu:RCOM_0576840
description phosphopentothenoylcysteine decarboxylase, putative (EC:4.1.1.36)
nr
ID XP_012075726.1
description PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
swissprot
ID Q9SWE5
description Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1
trembl
ID A0A067KFL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09314 PE=4 SV=1
Gene Ontology
ID GO:0004633
description probable phosphopantothenoylcysteine decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08555: 121734-125352 , PASA_asmbl_08556: 122950-123359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_100 0.0 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
2 Hb_012022_040 0.0523573805 - - Protein SIS1, putative [Ricinus communis]
3 Hb_000032_380 0.0600933914 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000270_310 0.0606473305 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
5 Hb_003582_060 0.0613971883 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
6 Hb_000390_300 0.063171188 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
7 Hb_164010_040 0.0639816552 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_000340_180 0.0645847521 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
9 Hb_003938_090 0.0648505147 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000221_190 0.0648932037 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
11 Hb_001511_060 0.0658934725 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
12 Hb_007878_010 0.0661491013 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
13 Hb_168978_010 0.0662568025 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
14 Hb_002641_060 0.0669983553 - - prefoldin subunit, putative [Ricinus communis]
15 Hb_010423_030 0.0678954229 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
16 Hb_161574_020 0.0681721941 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
17 Hb_006615_240 0.0690490776 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
18 Hb_002936_010 0.0707515632 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
19 Hb_017895_040 0.0710096094 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
20 Hb_013575_010 0.0710752468 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]

Gene co-expression network

sample Hb_001278_100 Hb_001278_100 Hb_012022_040 Hb_012022_040 Hb_001278_100--Hb_012022_040 Hb_000032_380 Hb_000032_380 Hb_001278_100--Hb_000032_380 Hb_000270_310 Hb_000270_310 Hb_001278_100--Hb_000270_310 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_001278_100--Hb_000390_300 Hb_164010_040 Hb_164010_040 Hb_001278_100--Hb_164010_040 Hb_000856_010 Hb_000856_010 Hb_012022_040--Hb_000856_010 Hb_004109_220 Hb_004109_220 Hb_012022_040--Hb_004109_220 Hb_149985_010 Hb_149985_010 Hb_012022_040--Hb_149985_010 Hb_000221_190 Hb_000221_190 Hb_012022_040--Hb_000221_190 Hb_000928_070 Hb_000928_070 Hb_012022_040--Hb_000928_070 Hb_007101_300 Hb_007101_300 Hb_000032_380--Hb_007101_300 Hb_003389_040 Hb_003389_040 Hb_000032_380--Hb_003389_040 Hb_000417_040 Hb_000417_040 Hb_000032_380--Hb_000417_040 Hb_005054_350 Hb_005054_350 Hb_000032_380--Hb_005054_350 Hb_008226_060 Hb_008226_060 Hb_000032_380--Hb_008226_060 Hb_161574_020 Hb_161574_020 Hb_000270_310--Hb_161574_020 Hb_000086_170 Hb_000086_170 Hb_000270_310--Hb_000086_170 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_000270_310--Hb_164010_040 Hb_007878_010 Hb_007878_010 Hb_000270_310--Hb_007878_010 Hb_006615_240 Hb_006615_240 Hb_003582_060--Hb_006615_240 Hb_000003_230 Hb_000003_230 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_008494_100 Hb_008494_100 Hb_000390_300--Hb_008494_100 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_000390_300--Hb_006615_240 Hb_007676_080 Hb_007676_080 Hb_000390_300--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000390_300--Hb_006573_190 Hb_002754_010 Hb_002754_010 Hb_164010_040--Hb_002754_010 Hb_000869_080 Hb_000869_080 Hb_164010_040--Hb_000869_080 Hb_062226_130 Hb_062226_130 Hb_164010_040--Hb_062226_130 Hb_013358_040 Hb_013358_040 Hb_164010_040--Hb_013358_040 Hb_002073_200 Hb_002073_200 Hb_164010_040--Hb_002073_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2412 22.557 23.8232 32.0316 18.5718 20.8212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8806 40.7805 23.9778 21.6678 18.5252

CAGE analysis