Hb_024439_010

Information

Type -
Description -
Location Contig24439: 10773-12609
Sequence    

Annotation

kegg
ID tcc:TCM_007062
description Longevity assurance factor, putative
nr
ID XP_012066874.1
description PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
swissprot
ID Q9LJK3
description LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1
trembl
ID A0A067LDZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01603 PE=4 SV=1
Gene Ontology
ID GO:0005783
description lag1 longevity assurance homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25494: 11168-12976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024439_010 0.0 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
2 Hb_000390_300 0.0554764114 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
3 Hb_017895_040 0.062607857 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
4 Hb_004058_030 0.0657351808 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
5 Hb_004102_110 0.0666366548 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
6 Hb_005496_140 0.0681773649 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004696_080 0.0681834467 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
8 Hb_003582_060 0.0693232323 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_000340_180 0.0709773467 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
10 Hb_006615_240 0.0721608802 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
11 Hb_003605_090 0.0735330654 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
12 Hb_003304_020 0.0745458267 - - Polyadenylate-binding protein RBP47C [Glycine soja]
13 Hb_007676_080 0.074565543 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
14 Hb_000465_160 0.0751813003 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
15 Hb_000003_230 0.0752251439 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
16 Hb_002863_050 0.0758895017 - - aldose 1-epimerase, putative [Ricinus communis]
17 Hb_001278_100 0.0762242788 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
18 Hb_075449_010 0.0771454717 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
19 Hb_011344_210 0.0773176 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
20 Hb_000288_030 0.0777317 - - PREDICTED: syntaxin-32 [Jatropha curcas]

Gene co-expression network

sample Hb_024439_010 Hb_024439_010 Hb_000390_300 Hb_000390_300 Hb_024439_010--Hb_000390_300 Hb_017895_040 Hb_017895_040 Hb_024439_010--Hb_017895_040 Hb_004058_030 Hb_004058_030 Hb_024439_010--Hb_004058_030 Hb_004102_110 Hb_004102_110 Hb_024439_010--Hb_004102_110 Hb_005496_140 Hb_005496_140 Hb_024439_010--Hb_005496_140 Hb_004696_080 Hb_004696_080 Hb_024439_010--Hb_004696_080 Hb_008494_100 Hb_008494_100 Hb_000390_300--Hb_008494_100 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_006615_240 Hb_006615_240 Hb_000390_300--Hb_006615_240 Hb_007676_080 Hb_007676_080 Hb_000390_300--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000390_300--Hb_006573_190 Hb_000375_350 Hb_000375_350 Hb_017895_040--Hb_000375_350 Hb_003582_060 Hb_003582_060 Hb_017895_040--Hb_003582_060 Hb_017895_040--Hb_005496_140 Hb_013575_010 Hb_013575_010 Hb_017895_040--Hb_013575_010 Hb_002641_060 Hb_002641_060 Hb_017895_040--Hb_002641_060 Hb_003304_020 Hb_003304_020 Hb_004058_030--Hb_003304_020 Hb_000003_230 Hb_000003_230 Hb_004058_030--Hb_000003_230 Hb_002681_100 Hb_002681_100 Hb_004058_030--Hb_002681_100 Hb_004058_030--Hb_006615_240 Hb_004058_030--Hb_003582_060 Hb_000684_380 Hb_000684_380 Hb_004058_030--Hb_000684_380 Hb_000016_160 Hb_000016_160 Hb_004102_110--Hb_000016_160 Hb_004143_150 Hb_004143_150 Hb_004102_110--Hb_004143_150 Hb_026527_050 Hb_026527_050 Hb_004102_110--Hb_026527_050 Hb_009615_070 Hb_009615_070 Hb_004102_110--Hb_009615_070 Hb_000527_060 Hb_000527_060 Hb_004102_110--Hb_000527_060 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_000638_250 Hb_000638_250 Hb_004696_080--Hb_000638_250 Hb_152784_010 Hb_152784_010 Hb_004696_080--Hb_152784_010 Hb_000805_240 Hb_000805_240 Hb_004696_080--Hb_000805_240 Hb_148121_040 Hb_148121_040 Hb_004696_080--Hb_148121_040 Hb_000291_080 Hb_000291_080 Hb_004696_080--Hb_000291_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.71691 7.62854 11.4292 15.7995 10.5939 10.4255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8323 22.6551 17.1214 9.07562 8.41576

CAGE analysis