Hb_002863_050

Information

Type -
Description -
Location Contig2863: 28535-38164
Sequence    

Annotation

kegg
ID rcu:RCOM_1443110
description aldose 1-epimerase, putative
nr
ID XP_002512775.1
description aldose 1-epimerase, putative [Ricinus communis]
swissprot
ID Q40784
description Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1
trembl
ID B9RGR6
description Aldose 1-epimerase, putative OS=Ricinus communis GN=RCOM_1443110 PE=4 SV=1
Gene Ontology
ID GO:0016853
description glucose-6-phosphate 1-epimerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29887: 28546-38086
cDNA
(Sanger)
(ID:Location)		 023_K18.ab1: 32606-38086

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002863_050 0.0 - - aldose 1-epimerase, putative [Ricinus communis]
2 Hb_005496_140 0.0539455742 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000580_180 0.05608482 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005144_160 0.0590953526 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
5 Hb_001142_030 0.0656437761 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
6 Hb_003416_010 0.0661450382 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
7 Hb_000416_040 0.0662427059 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
8 Hb_000563_320 0.0666994806 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
9 Hb_075449_010 0.0684897668 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
10 Hb_000373_070 0.0688248588 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
11 Hb_002740_030 0.0688391576 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
12 Hb_001252_130 0.0696441379 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
13 Hb_000340_180 0.0702128719 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
14 Hb_011344_210 0.0714149331 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
15 Hb_007691_030 0.0715459754 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
16 Hb_002235_250 0.0728983418 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
17 Hb_001163_050 0.0736600367 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
18 Hb_006455_120 0.0741414202 - - n6-DNA-methyltransferase, putative [Ricinus communis]
19 Hb_007441_190 0.0753415263 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
20 Hb_000227_080 0.0757330073 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002863_050 Hb_002863_050 Hb_005496_140 Hb_005496_140 Hb_002863_050--Hb_005496_140 Hb_000580_180 Hb_000580_180 Hb_002863_050--Hb_000580_180 Hb_005144_160 Hb_005144_160 Hb_002863_050--Hb_005144_160 Hb_001142_030 Hb_001142_030 Hb_002863_050--Hb_001142_030 Hb_003416_010 Hb_003416_010 Hb_002863_050--Hb_003416_010 Hb_000416_040 Hb_000416_040 Hb_002863_050--Hb_000416_040 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_000375_350 Hb_000375_350 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_005496_140--Hb_003416_010 Hb_000580_180--Hb_005144_160 Hb_011344_210 Hb_011344_210 Hb_000580_180--Hb_011344_210 Hb_000580_180--Hb_001142_030 Hb_000120_670 Hb_000120_670 Hb_000580_180--Hb_000120_670 Hb_007691_030 Hb_007691_030 Hb_000580_180--Hb_007691_030 Hb_005144_160--Hb_007691_030 Hb_002200_080 Hb_002200_080 Hb_005144_160--Hb_002200_080 Hb_003177_030 Hb_003177_030 Hb_005144_160--Hb_003177_030 Hb_006634_070 Hb_006634_070 Hb_005144_160--Hb_006634_070 Hb_002740_030 Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_001142_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_120410_010 Hb_120410_010 Hb_001142_030--Hb_120410_010 Hb_008847_030 Hb_008847_030 Hb_003416_010--Hb_008847_030 Hb_002641_060 Hb_002641_060 Hb_003416_010--Hb_002641_060 Hb_003938_090 Hb_003938_090 Hb_003416_010--Hb_003938_090 Hb_003416_010--Hb_001142_030 Hb_000416_040--Hb_002740_030 Hb_000563_320 Hb_000563_320 Hb_000416_040--Hb_000563_320 Hb_000416_040--Hb_001142_030 Hb_000416_040--Hb_001163_050 Hb_036790_100 Hb_036790_100 Hb_000416_040--Hb_036790_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2509 12.5038 13.3329 19.0548 17.5914 19.0806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4581 25.4862 20.18 10.0373 13.7957

CAGE analysis