Hb_002641_060

Information

Type -
Description -
Location Contig2641: 100297-107194
Sequence    

Annotation

kegg
ID rcu:RCOM_1000880
description prefoldin subunit, putative
nr
ID XP_002519249.1
description prefoldin subunit, putative [Ricinus communis]
swissprot
ID P57741
description Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=1 SV=1
trembl
ID B9RZT0
description Prefoldin subunit, putative OS=Ricinus communis GN=RCOM_1000880 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable prefoldin subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27655: 101128-106931 , PASA_asmbl_27656: 104992-107206 , PASA_asmbl_27658: 101663-102124 , PASA_asmbl_27659: 100314-107151 , PASA_asmbl_27660: 104501-104611 , PASA_asmbl_27662: 102679-102992
cDNA
(Sanger)
(ID:Location)		 050_M04.ab1: 105671-107206

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_060 0.0 - - prefoldin subunit, putative [Ricinus communis]
2 Hb_013575_010 0.046781879 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
3 Hb_007878_010 0.0508203251 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
4 Hb_008616_050 0.05454927 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
5 Hb_008847_030 0.0571215435 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
6 Hb_003416_010 0.0591140854 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
7 Hb_000375_350 0.0591501232 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
8 Hb_000260_350 0.0594244422 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005496_140 0.0613505138 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000976_120 0.0615606842 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
11 Hb_000081_160 0.0619984221 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
12 Hb_003938_090 0.062196145 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000599_250 0.0626727496 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
14 Hb_161574_020 0.0634686754 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
15 Hb_017895_040 0.0641869022 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
16 Hb_001278_100 0.0669983553 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
17 Hb_001318_280 0.0673646389 - - Protein FAM18B, putative [Ricinus communis]
18 Hb_027380_060 0.0703494474 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
19 Hb_001252_130 0.0708032097 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
20 Hb_002681_100 0.0721018834 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002641_060 Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350 Hb_003057_060 Hb_003057_060 Hb_013575_010--Hb_003057_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_013575_010--Hb_000375_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100 Hb_161574_020 Hb_161574_020 Hb_007878_010--Hb_161574_020 Hb_002171_060 Hb_002171_060 Hb_007878_010--Hb_002171_060 Hb_001278_100 Hb_001278_100 Hb_007878_010--Hb_001278_100 Hb_000720_040 Hb_000720_040 Hb_007878_010--Hb_000720_040 Hb_000270_310 Hb_000270_310 Hb_007878_010--Hb_000270_310 Hb_001232_190 Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_001318_280 Hb_001318_280 Hb_008616_050--Hb_001318_280 Hb_008616_050--Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_005496_140 Hb_005496_140 Hb_003416_010--Hb_005496_140 Hb_002863_050 Hb_002863_050 Hb_003416_010--Hb_002863_050 Hb_003416_010--Hb_003938_090 Hb_001142_030 Hb_001142_030 Hb_003416_010--Hb_001142_030 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_000375_350--Hb_005496_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9747 8.19263 14.6397 17.496 12.1653 13.5785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8542 18.9382 12.9437 10.9388 11.8691

CAGE analysis