Hb_008616_050

Information

Type -
Description -
Location Contig8616: 57996-64214
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06890g
description POPTRDRAFT_1103503; tatD-related deoxyribonuclease family protein
nr
ID XP_012074297.1
description PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
swissprot
ID Q640V9
description Putative deoxyribonuclease TATDN1 OS=Xenopus laevis GN=tatdn1 PE=2 SV=1
trembl
ID B9IIJ5
description TatD-related deoxyribonuclease family protein OS=Populus trichocarpa GN=POPTR_0016s06890g PE=4 SV=2
Gene Ontology
ID GO:0016888
description deoxyribonuclease tatdn1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60830: 57964-64213 , PASA_asmbl_60831: 58261-64213
cDNA
(Sanger)
(ID:Location)		 013_P22.ab1: 59656-64213

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008616_050 0.0 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
2 Hb_001232_190 0.0501082838 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
3 Hb_002641_060 0.05454927 - - prefoldin subunit, putative [Ricinus communis]
4 Hb_004545_110 0.0594258329 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
5 Hb_009898_050 0.0599769796 - - PREDICTED: beta-taxilin [Jatropha curcas]
6 Hb_001318_280 0.0613782512 - - Protein FAM18B, putative [Ricinus communis]
7 Hb_008847_030 0.0632235536 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
8 Hb_000676_120 0.0656724145 - - -
9 Hb_013575_010 0.0662883505 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
10 Hb_002553_060 0.0663271151 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
11 Hb_000905_110 0.0670972415 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
12 Hb_000666_100 0.0703319212 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
13 Hb_163175_010 0.0714771474 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
14 Hb_109000_020 0.0715080221 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
15 Hb_011628_060 0.0723009524 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
16 Hb_003994_230 0.0725895394 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
17 Hb_027380_060 0.0732501315 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
18 Hb_000260_350 0.0733821187 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003528_030 0.0735799702 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
20 Hb_001021_150 0.0744254007 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]

Gene co-expression network

sample Hb_008616_050 Hb_008616_050 Hb_001232_190 Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_002641_060 Hb_002641_060 Hb_008616_050--Hb_002641_060 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_001318_280 Hb_001318_280 Hb_008616_050--Hb_001318_280 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030 Hb_000579_120 Hb_000579_120 Hb_001232_190--Hb_000579_120 Hb_109000_020 Hb_109000_020 Hb_001232_190--Hb_109000_020 Hb_001232_190--Hb_002641_060 Hb_000058_130 Hb_000058_130 Hb_001232_190--Hb_000058_130 Hb_000207_150 Hb_000207_150 Hb_001232_190--Hb_000207_150 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_000080_130 Hb_000080_130 Hb_004545_110--Hb_000080_130 Hb_133702_010 Hb_133702_010 Hb_004545_110--Hb_133702_010 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030 Hb_006153_070 Hb_006153_070 Hb_009898_050--Hb_006153_070 Hb_000110_310 Hb_000110_310 Hb_009898_050--Hb_000110_310 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_000640_170 Hb_000640_170 Hb_009898_050--Hb_000640_170 Hb_009898_050--Hb_000579_120 Hb_172632_100 Hb_172632_100 Hb_001318_280--Hb_172632_100 Hb_003994_230 Hb_003994_230 Hb_001318_280--Hb_003994_230 Hb_000081_160 Hb_000081_160 Hb_001318_280--Hb_000081_160 Hb_002553_060 Hb_002553_060 Hb_001318_280--Hb_002553_060 Hb_001318_280--Hb_002641_060 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_003938_090 Hb_003938_090 Hb_008847_030--Hb_003938_090 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.7351 3.81063 8.12307 9.83342 6.45862 6.78194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.38931 9.03765 5.5743 7.53207 7.16122

CAGE analysis