Hb_000080_130

Information

Type -
Description -
Location Contig80: 86943-95974
Sequence    

Annotation

kegg
ID pop:POPTR_0007s01460g
description POPTRDRAFT_819686; RabGAP/TBC domain-containing family protein
nr
ID XP_012065234.1
description PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
swissprot
ID Q9NU19
description TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3
trembl
ID A0A067L669
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20922 PE=4 SV=1
Gene Ontology
ID GO:0046686
description ypt rab-gap domain of gyp1p superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58734: 86864-95926 , PASA_asmbl_58735: 93865-94637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_130 0.0 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
2 Hb_004545_110 0.0569438783 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
3 Hb_015675_040 0.0614545183 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
4 Hb_001269_130 0.0678781067 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
5 Hb_133702_010 0.0703372298 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_005167_010 0.0717779543 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
7 Hb_000663_060 0.0719662027 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
8 Hb_003878_090 0.0723909661 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
9 Hb_001662_130 0.0724684413 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
10 Hb_002157_120 0.073134362 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007904_230 0.0737165156 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
12 Hb_000364_050 0.0747845376 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_003266_030 0.0751325989 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
14 Hb_004452_120 0.0753595142 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
15 Hb_000069_640 0.0755837724 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
16 Hb_006132_090 0.0779388875 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
17 Hb_000061_180 0.0785049626 - - exonuclease, putative [Ricinus communis]
18 Hb_005800_030 0.0787422696 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
19 Hb_000603_160 0.0788820389 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
20 Hb_000666_100 0.0789678644 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000080_130 Hb_000080_130 Hb_004545_110 Hb_004545_110 Hb_000080_130--Hb_004545_110 Hb_015675_040 Hb_015675_040 Hb_000080_130--Hb_015675_040 Hb_001269_130 Hb_001269_130 Hb_000080_130--Hb_001269_130 Hb_133702_010 Hb_133702_010 Hb_000080_130--Hb_133702_010 Hb_005167_010 Hb_005167_010 Hb_000080_130--Hb_005167_010 Hb_000663_060 Hb_000663_060 Hb_000080_130--Hb_000663_060 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_008616_050 Hb_008616_050 Hb_004545_110--Hb_008616_050 Hb_004545_110--Hb_133702_010 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030 Hb_158530_020 Hb_158530_020 Hb_015675_040--Hb_158530_020 Hb_005976_080 Hb_005976_080 Hb_015675_040--Hb_005976_080 Hb_011224_050 Hb_011224_050 Hb_015675_040--Hb_011224_050 Hb_000840_200 Hb_000840_200 Hb_015675_040--Hb_000840_200 Hb_000185_220 Hb_000185_220 Hb_015675_040--Hb_000185_220 Hb_001269_130--Hb_000663_060 Hb_000364_050 Hb_000364_050 Hb_001269_130--Hb_000364_050 Hb_003098_070 Hb_003098_070 Hb_001269_130--Hb_003098_070 Hb_006824_010 Hb_006824_010 Hb_001269_130--Hb_006824_010 Hb_005946_150 Hb_005946_150 Hb_001269_130--Hb_005946_150 Hb_133702_010--Hb_005800_030 Hb_004452_120 Hb_004452_120 Hb_133702_010--Hb_004452_120 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_007975_060 Hb_007975_060 Hb_133702_010--Hb_007975_060 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_001195_060 Hb_001195_060 Hb_005167_010--Hb_001195_060 Hb_012799_170 Hb_012799_170 Hb_005167_010--Hb_012799_170 Hb_006132_090 Hb_006132_090 Hb_005167_010--Hb_006132_090 Hb_005167_010--Hb_004545_110 Hb_005167_010--Hb_007975_060 Hb_001828_180 Hb_001828_180 Hb_000663_060--Hb_001828_180 Hb_000778_010 Hb_000778_010 Hb_000663_060--Hb_000778_010 Hb_000363_190 Hb_000363_190 Hb_000663_060--Hb_000363_190 Hb_023001_040 Hb_023001_040 Hb_000663_060--Hb_023001_040 Hb_163175_010 Hb_163175_010 Hb_000663_060--Hb_163175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50496 4.51058 9.46856 10.18 3.76273 4.53069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.992 7.67153 6.46923 6.39685 8.91785

CAGE analysis