Hb_000721_030

Information

Type rubber biosynthesis
Description Gene Name: Mevalonate diphosphate decarboxylase
Location Contig721: 47991-54444
Sequence    

Annotation

kegg
ID rcu:RCOM_0888230
description diphosphomevalonate decarboxylase, putative (EC:4.1.1.33)
nr
ID AFJ74331.1
description mevalonate diphosphate decarboxylase [Hevea brasiliensis]
swissprot
ID Q54YQ9
description Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1
trembl
ID Q944G0
description Mevalonate disphosphate decarboxylase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description diphosphomevalonate decarboxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55656: 48048-54528 , PASA_asmbl_55657: 48153-54440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000721_030 0.0 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
2 Hb_133702_010 0.0653297977 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_004452_120 0.0819208201 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
4 Hb_005800_030 0.0819398276 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
5 Hb_001946_390 0.0854886993 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
6 Hb_012573_050 0.0860930264 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
7 Hb_001504_030 0.0888269356 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
8 Hb_002687_120 0.0892315492 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
9 Hb_000244_180 0.0898838918 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004754_050 0.0912535318 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
11 Hb_004223_050 0.0919883633 - - hexokinase [Manihot esculenta]
12 Hb_007975_060 0.0923945663 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
13 Hb_004545_110 0.0957519749 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
14 Hb_000080_130 0.0963067528 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
15 Hb_003266_030 0.0975386843 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
16 Hb_001195_400 0.0997308811 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
17 Hb_001195_060 0.1001606802 - - Protein yrdA, putative [Ricinus communis]
18 Hb_000127_140 0.1004091159 - - transporter-related family protein [Populus trichocarpa]
19 Hb_002392_010 0.1013401233 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
20 Hb_000061_180 0.1015316219 - - exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000721_030 Hb_000721_030 Hb_133702_010 Hb_133702_010 Hb_000721_030--Hb_133702_010 Hb_004452_120 Hb_004452_120 Hb_000721_030--Hb_004452_120 Hb_005800_030 Hb_005800_030 Hb_000721_030--Hb_005800_030 Hb_001946_390 Hb_001946_390 Hb_000721_030--Hb_001946_390 Hb_012573_050 Hb_012573_050 Hb_000721_030--Hb_012573_050 Hb_001504_030 Hb_001504_030 Hb_000721_030--Hb_001504_030 Hb_133702_010--Hb_005800_030 Hb_133702_010--Hb_004452_120 Hb_004545_110 Hb_004545_110 Hb_133702_010--Hb_004545_110 Hb_007975_060 Hb_007975_060 Hb_133702_010--Hb_007975_060 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_010863_050 Hb_010863_050 Hb_004452_120--Hb_010863_050 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050 Hb_000061_180 Hb_000061_180 Hb_004452_120--Hb_000061_180 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020 Hb_005800_030--Hb_004545_110 Hb_002820_020 Hb_002820_020 Hb_005800_030--Hb_002820_020 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_005800_030--Hb_004452_120 Hb_005800_030--Hb_000061_180 Hb_002392_010 Hb_002392_010 Hb_001946_390--Hb_002392_010 Hb_012733_040 Hb_012733_040 Hb_001946_390--Hb_012733_040 Hb_001946_390--Hb_004452_120 Hb_066842_010 Hb_066842_010 Hb_001946_390--Hb_066842_010 Hb_000174_260 Hb_000174_260 Hb_001946_390--Hb_000174_260 Hb_000244_180 Hb_000244_180 Hb_012573_050--Hb_000244_180 Hb_156850_100 Hb_156850_100 Hb_012573_050--Hb_156850_100 Hb_000116_130 Hb_000116_130 Hb_012573_050--Hb_000116_130 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_012573_050--Hb_007975_060 Hb_048093_010 Hb_048093_010 Hb_001504_030--Hb_048093_010 Hb_000189_480 Hb_000189_480 Hb_001504_030--Hb_000189_480 Hb_001504_030--Hb_133702_010 Hb_001314_080 Hb_001314_080 Hb_001504_030--Hb_001314_080 Hb_001102_020 Hb_001102_020 Hb_001504_030--Hb_001102_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.56532 2.78642 13.2054 15.883 5.12569 6.56251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.7032 7.50198 8.71551 7.52617 13.3884

CAGE analysis