Hb_000167_110

Information

Type -
Description -
Location Contig167: 75350-81260
Sequence    

Annotation

kegg
ID rcu:RCOM_0722140
description glycerol-3-phosphate dehydrogenase, putative (EC:1.1.3.21)
nr
ID XP_002529602.1
description glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9SS48
description Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial OS=Arabidopsis thaliana GN=SDP6 PE=1 SV=1
trembl
ID B9SUD3
description Glycerol-3-phosphate dehydrogenase OS=Ricinus communis GN=RCOM_0722140 PE=3 SV=1
Gene Ontology
ID GO:0009331
description glycerol-3-phosphate dehydrogenase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15406: 75311-79926 , PASA_asmbl_15407: 79939-81074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_110 0.0 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
2 Hb_011671_260 0.0675589732 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
3 Hb_008705_020 0.0708126626 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
4 Hb_000107_430 0.0749329956 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
5 Hb_003053_110 0.0749647106 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
6 Hb_003411_090 0.0753311616 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
7 Hb_003266_030 0.076771705 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
8 Hb_004452_120 0.0778873721 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
9 Hb_012150_030 0.079089317 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_000529_180 0.0794961981 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
11 Hb_001195_770 0.0812161188 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
12 Hb_000364_050 0.0824464657 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_010863_050 0.0827861168 - - OTU domain-containing protein 6B, putative [Ricinus communis]
14 Hb_006907_060 0.0869039494 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
15 Hb_002025_250 0.0876436911 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
16 Hb_000046_540 0.0877352063 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
17 Hb_048093_010 0.0886438258 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
18 Hb_002675_250 0.0888175449 - - aspartate aminotransferase, putative [Ricinus communis]
19 Hb_002762_110 0.0889961672 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007904_230 0.0899998184 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000167_110 Hb_000167_110 Hb_011671_260 Hb_011671_260 Hb_000167_110--Hb_011671_260 Hb_008705_020 Hb_008705_020 Hb_000167_110--Hb_008705_020 Hb_000107_430 Hb_000107_430 Hb_000167_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_000167_110--Hb_003053_110 Hb_003411_090 Hb_003411_090 Hb_000167_110--Hb_003411_090 Hb_003266_030 Hb_003266_030 Hb_000167_110--Hb_003266_030 Hb_011671_260--Hb_003266_030 Hb_002631_240 Hb_002631_240 Hb_011671_260--Hb_002631_240 Hb_073973_090 Hb_073973_090 Hb_011671_260--Hb_073973_090 Hb_006907_060 Hb_006907_060 Hb_011671_260--Hb_006907_060 Hb_004965_110 Hb_004965_110 Hb_011671_260--Hb_004965_110 Hb_001195_770 Hb_001195_770 Hb_008705_020--Hb_001195_770 Hb_008705_020--Hb_003053_110 Hb_030736_040 Hb_030736_040 Hb_008705_020--Hb_030736_040 Hb_008705_020--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_008705_020--Hb_000941_100 Hb_002762_110 Hb_002762_110 Hb_000107_430--Hb_002762_110 Hb_000107_430--Hb_003053_110 Hb_007741_110 Hb_007741_110 Hb_000107_430--Hb_007741_110 Hb_007192_030 Hb_007192_030 Hb_000107_430--Hb_007192_030 Hb_004644_030 Hb_004644_030 Hb_000107_430--Hb_004644_030 Hb_012150_030 Hb_012150_030 Hb_003053_110--Hb_012150_030 Hb_003053_110--Hb_000941_100 Hb_003053_110--Hb_001195_770 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_000317_260 Hb_000317_260 Hb_003411_090--Hb_000317_260 Hb_003411_090--Hb_003266_030 Hb_004951_060 Hb_004951_060 Hb_003411_090--Hb_004951_060 Hb_003411_090--Hb_011671_260 Hb_004452_120 Hb_004452_120 Hb_003411_090--Hb_004452_120 Hb_007904_230 Hb_007904_230 Hb_003266_030--Hb_007904_230 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_000926_080 Hb_000926_080 Hb_003266_030--Hb_000926_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.46264 2.91208 8.28315 6.54995 2.57305 2.33803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94692 3.79689 5.2007 4.39789 10.2217

CAGE analysis