Hb_030736_040

Information

Type -
Description -
Location Contig30736: 22248-30643
Sequence    

Annotation

kegg
ID rcu:RCOM_1032100
description hypothetical protein
nr
ID XP_012078224.1
description PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
swissprot
ID Q96QE3
description ATPase family AAA domain-containing protein 5 OS=Homo sapiens GN=ATAD5 PE=1 SV=4
trembl
ID A0A067K9A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12083 PE=4 SV=1
Gene Ontology
ID GO:0005634
description p-loop containing nucleoside triphosphate hydrolases superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32470: 23523-23746 , PASA_asmbl_32471: 22201-24163 , PASA_asmbl_32473: 26016-27450 , PASA_asmbl_32474: 27492-28595 , PASA_asmbl_32476: 29727-39780
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030736_040 0.0 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
2 Hb_001117_110 0.0527684712 - - PREDICTED: dynamin-2A [Jatropha curcas]
3 Hb_106890_010 0.0562264297 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_055690_010 0.061360663 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
5 Hb_003355_010 0.0662630698 - - Heat shock 70 kDa protein, putative [Ricinus communis]
6 Hb_068804_090 0.0669795377 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
7 Hb_008705_020 0.0682303033 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
8 Hb_000358_020 0.0746127489 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
9 Hb_005571_010 0.0758793159 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
10 Hb_000585_110 0.0785874915 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
11 Hb_005694_060 0.0789747306 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
12 Hb_000243_120 0.0796979438 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
13 Hb_000088_260 0.0823980648 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
14 Hb_004705_160 0.0831897924 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
15 Hb_013749_050 0.0833132183 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
16 Hb_138585_030 0.0842430146 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_002150_020 0.0850902165 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_006970_020 0.0858063425 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
19 Hb_001141_240 0.0862214118 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
20 Hb_003440_020 0.0863015147 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_030736_040 Hb_030736_040 Hb_001117_110 Hb_001117_110 Hb_030736_040--Hb_001117_110 Hb_106890_010 Hb_106890_010 Hb_030736_040--Hb_106890_010 Hb_055690_010 Hb_055690_010 Hb_030736_040--Hb_055690_010 Hb_003355_010 Hb_003355_010 Hb_030736_040--Hb_003355_010 Hb_068804_090 Hb_068804_090 Hb_030736_040--Hb_068804_090 Hb_008705_020 Hb_008705_020 Hb_030736_040--Hb_008705_020 Hb_005694_060 Hb_005694_060 Hb_001117_110--Hb_005694_060 Hb_015884_020 Hb_015884_020 Hb_001117_110--Hb_015884_020 Hb_116349_120 Hb_116349_120 Hb_001117_110--Hb_116349_120 Hb_001117_110--Hb_106890_010 Hb_000088_260 Hb_000088_260 Hb_001117_110--Hb_000088_260 Hb_106890_010--Hb_003355_010 Hb_003490_060 Hb_003490_060 Hb_106890_010--Hb_003490_060 Hb_005571_010 Hb_005571_010 Hb_106890_010--Hb_005571_010 Hb_007741_120 Hb_007741_120 Hb_106890_010--Hb_007741_120 Hb_019654_020 Hb_019654_020 Hb_106890_010--Hb_019654_020 Hb_000585_110 Hb_000585_110 Hb_055690_010--Hb_000585_110 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_002150_020 Hb_002150_020 Hb_055690_010--Hb_002150_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010 Hb_055690_010--Hb_005571_010 Hb_003355_010--Hb_005571_010 Hb_000496_130 Hb_000496_130 Hb_003355_010--Hb_000496_130 Hb_003355_010--Hb_007741_120 Hb_003355_010--Hb_003490_060 Hb_000748_090 Hb_000748_090 Hb_068804_090--Hb_000748_090 Hb_013749_050 Hb_013749_050 Hb_068804_090--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_068804_090--Hb_007012_030 Hb_000243_120 Hb_000243_120 Hb_068804_090--Hb_000243_120 Hb_004629_030 Hb_004629_030 Hb_068804_090--Hb_004629_030 Hb_001195_770 Hb_001195_770 Hb_008705_020--Hb_001195_770 Hb_003053_110 Hb_003053_110 Hb_008705_020--Hb_003053_110 Hb_000167_110 Hb_000167_110 Hb_008705_020--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_008705_020--Hb_006907_060 Hb_000941_100 Hb_000941_100 Hb_008705_020--Hb_000941_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.899277 2.04794 3.6475 3.23288 1.08665 1.08448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27452 1.25998 1.8633 2.751 5.56201

CAGE analysis