Hb_003053_110

Information

Type -
Description -
Location Contig3053: 128913-142330
Sequence    

Annotation

kegg
ID rcu:RCOM_1095210
description hypothetical protein
nr
ID XP_012081536.1
description PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
swissprot
ID O22609
description Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2
trembl
ID A0A067LA60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09590 PE=4 SV=1
Gene Ontology
ID GO:0004252
description beta-galactosidase 9 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32220: 128912-135178 , PASA_asmbl_32221: 131649-132027 , PASA_asmbl_32222: 135588-139829 , PASA_asmbl_32223: 136853-137055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003053_110 0.0 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
2 Hb_012150_030 0.0419142475 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_000941_100 0.0516901971 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
4 Hb_008705_020 0.055801408 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
5 Hb_001195_770 0.0560570049 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
6 Hb_007741_110 0.0580608254 - - -
7 Hb_134849_010 0.0595513823 - - ATP synthase subunit d, putative [Ricinus communis]
8 Hb_048093_010 0.0622378862 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
9 Hb_000107_430 0.0674107445 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
10 Hb_002762_110 0.0682842589 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006907_060 0.068611617 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
12 Hb_073973_090 0.0712107494 - - Aminotransferase ybdL, putative [Ricinus communis]
13 Hb_004452_120 0.0724381009 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
14 Hb_004644_030 0.074238341 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
15 Hb_010863_050 0.0745741067 - - OTU domain-containing protein 6B, putative [Ricinus communis]
16 Hb_000167_110 0.0749647106 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
17 Hb_000086_080 0.077121648 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001438_010 0.077238986 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
19 Hb_000032_500 0.078443031 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
20 Hb_000364_050 0.0799647511 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003053_110 Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_003053_110--Hb_012150_030 Hb_000941_100 Hb_000941_100 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_003053_110--Hb_001195_770 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_012150_030--Hb_000941_100 Hb_000941_100--Hb_048093_010 Hb_000941_100--Hb_001195_770 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_008705_020--Hb_001195_770 Hb_030736_040 Hb_030736_040 Hb_008705_020--Hb_030736_040 Hb_000167_110 Hb_000167_110 Hb_008705_020--Hb_000167_110 Hb_008705_020--Hb_006907_060 Hb_008705_020--Hb_000941_100 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_001195_770--Hb_006907_060 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110 Hb_007741_110--Hb_006907_060 Hb_000107_430 Hb_000107_430 Hb_007741_110--Hb_000107_430 Hb_001438_010 Hb_001438_010 Hb_007741_110--Hb_001438_010 Hb_007741_110--Hb_012150_030 Hb_002631_240 Hb_002631_240 Hb_007741_110--Hb_002631_240 Hb_000032_500 Hb_000032_500 Hb_134849_010--Hb_000032_500 Hb_002774_190 Hb_002774_190 Hb_134849_010--Hb_002774_190 Hb_033312_010 Hb_033312_010 Hb_134849_010--Hb_033312_010 Hb_134849_010--Hb_048093_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.1649 5.24163 12.6585 10.5223 4.3729 4.9853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.38305 8.03675 5.96284 7.0626 19.0897

CAGE analysis