Hb_000032_500

Information

Type -
Description -
Location Contig32: 400642-407820
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10780g
description POPTRDRAFT_751194; hypothetical protein
nr
ID XP_012086693.1
description PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
swissprot
ID P51327
description ATP-dependent zinc metalloprotease FtsH OS=Porphyra purpurea GN=ftsH PE=3 SV=1
trembl
ID A0A067K0G6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20430 PE=4 SV=1
Gene Ontology
ID GO:0004222
description atp-dependent zinc metalloprotease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33756: 400685-400887 , PASA_asmbl_33757: 401143-403584 , PASA_asmbl_33758: 404158-407769 , PASA_asmbl_33759: 404890-406139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_500 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
2 Hb_134849_010 0.066061713 - - ATP synthase subunit d, putative [Ricinus communis]
3 Hb_001677_220 0.0697411449 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
4 Hb_001105_040 0.0751811043 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000941_100 0.0761408562 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
6 Hb_000200_010 0.0776082566 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
7 Hb_008705_020 0.0779964086 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
8 Hb_003053_110 0.078443031 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
9 Hb_001195_770 0.0803080466 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
10 Hb_002542_160 0.0817391096 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
11 Hb_025194_050 0.0837740296 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
12 Hb_033312_010 0.0844539528 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_012150_030 0.0855898666 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_001214_050 0.0876974281 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
15 Hb_001832_200 0.0913817454 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_048093_010 0.0939975446 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
17 Hb_000189_450 0.0947355954 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
18 Hb_005511_140 0.0948527965 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
19 Hb_000617_250 0.0951042492 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
20 Hb_016219_030 0.0956975794 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_500 Hb_000032_500 Hb_134849_010 Hb_134849_010 Hb_000032_500--Hb_134849_010 Hb_001677_220 Hb_001677_220 Hb_000032_500--Hb_001677_220 Hb_001105_040 Hb_001105_040 Hb_000032_500--Hb_001105_040 Hb_000941_100 Hb_000941_100 Hb_000032_500--Hb_000941_100 Hb_000200_010 Hb_000200_010 Hb_000032_500--Hb_000200_010 Hb_008705_020 Hb_008705_020 Hb_000032_500--Hb_008705_020 Hb_003053_110 Hb_003053_110 Hb_134849_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_134849_010--Hb_012150_030 Hb_002774_190 Hb_002774_190 Hb_134849_010--Hb_002774_190 Hb_033312_010 Hb_033312_010 Hb_134849_010--Hb_033312_010 Hb_048093_010 Hb_048093_010 Hb_134849_010--Hb_048093_010 Hb_003142_010 Hb_003142_010 Hb_001677_220--Hb_003142_010 Hb_000189_450 Hb_000189_450 Hb_001677_220--Hb_000189_450 Hb_000008_350 Hb_000008_350 Hb_001677_220--Hb_000008_350 Hb_003124_120 Hb_003124_120 Hb_001677_220--Hb_003124_120 Hb_000816_200 Hb_000816_200 Hb_001677_220--Hb_000816_200 Hb_001832_200 Hb_001832_200 Hb_001105_040--Hb_001832_200 Hb_025194_050 Hb_025194_050 Hb_001105_040--Hb_025194_050 Hb_000128_060 Hb_000128_060 Hb_001105_040--Hb_000128_060 Hb_016219_010 Hb_016219_010 Hb_001105_040--Hb_016219_010 Hb_001105_040--Hb_008705_020 Hb_000941_100--Hb_003053_110 Hb_000941_100--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000941_100--Hb_001195_770 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_000200_010--Hb_134849_010 Hb_000200_010--Hb_003142_010 Hb_000200_010--Hb_001677_220 Hb_000200_010--Hb_001105_040 Hb_012506_070 Hb_012506_070 Hb_000200_010--Hb_012506_070 Hb_008705_020--Hb_001195_770 Hb_008705_020--Hb_003053_110 Hb_030736_040 Hb_030736_040 Hb_008705_020--Hb_030736_040 Hb_000167_110 Hb_000167_110 Hb_008705_020--Hb_000167_110 Hb_008705_020--Hb_006907_060 Hb_008705_020--Hb_000941_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55601 4.43236 8.48851 6.46459 3.08452 3.47957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.39217 5.29089 2.53318 5.68048 15.7788

CAGE analysis