Hb_000200_010

Information

Type -
Description -
Location Contig200: 29803-46376
Sequence    

Annotation

kegg
ID rcu:RCOM_0275340
description TRANSPARENT TESTA 12 protein, putative
nr
ID XP_012075691.1
description PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
swissprot
ID Q8RWF5
description MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1
trembl
ID B9T1W0
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0275340 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20175: 38038-40630 , PASA_asmbl_20176: 42503-42992 , PASA_asmbl_20177: 45384-46163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_010 0.0 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
2 Hb_000032_500 0.0776082566 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
3 Hb_134849_010 0.0928403008 - - ATP synthase subunit d, putative [Ricinus communis]
4 Hb_003142_010 0.093147752 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
5 Hb_001677_220 0.0979719809 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
6 Hb_001105_040 0.0998893239 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_012506_070 0.1004725484 - - hypothetical protein POPTR_0004s20060g [Populus trichocarpa]
8 Hb_016219_030 0.1029972725 - - cytochrome P450, putative [Ricinus communis]
9 Hb_002542_160 0.1032443456 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
10 Hb_000189_450 0.1059305389 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
11 Hb_000085_070 0.1064483404 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
12 Hb_033312_010 0.1070680177 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_025194_050 0.1087626454 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
14 Hb_001080_070 0.1093922298 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
15 Hb_000648_040 0.1099915228 - - unknown [Populus trichocarpa]
16 Hb_000617_250 0.113240804 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
17 Hb_000438_140 0.1145306605 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
18 Hb_000108_020 0.1153967828 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
19 Hb_001832_200 0.1158152336 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_001109_050 0.1201640731 - - PREDICTED: ankyrin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000200_010 Hb_000200_010 Hb_000032_500 Hb_000032_500 Hb_000200_010--Hb_000032_500 Hb_134849_010 Hb_134849_010 Hb_000200_010--Hb_134849_010 Hb_003142_010 Hb_003142_010 Hb_000200_010--Hb_003142_010 Hb_001677_220 Hb_001677_220 Hb_000200_010--Hb_001677_220 Hb_001105_040 Hb_001105_040 Hb_000200_010--Hb_001105_040 Hb_012506_070 Hb_012506_070 Hb_000200_010--Hb_012506_070 Hb_000032_500--Hb_134849_010 Hb_000032_500--Hb_001677_220 Hb_000032_500--Hb_001105_040 Hb_000941_100 Hb_000941_100 Hb_000032_500--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_000032_500--Hb_008705_020 Hb_003053_110 Hb_003053_110 Hb_134849_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_134849_010--Hb_012150_030 Hb_002774_190 Hb_002774_190 Hb_134849_010--Hb_002774_190 Hb_033312_010 Hb_033312_010 Hb_134849_010--Hb_033312_010 Hb_048093_010 Hb_048093_010 Hb_134849_010--Hb_048093_010 Hb_003142_010--Hb_001677_220 Hb_000189_450 Hb_000189_450 Hb_003142_010--Hb_000189_450 Hb_001080_070 Hb_001080_070 Hb_003142_010--Hb_001080_070 Hb_001009_260 Hb_001009_260 Hb_003142_010--Hb_001009_260 Hb_000617_250 Hb_000617_250 Hb_003142_010--Hb_000617_250 Hb_001677_220--Hb_000189_450 Hb_000008_350 Hb_000008_350 Hb_001677_220--Hb_000008_350 Hb_003124_120 Hb_003124_120 Hb_001677_220--Hb_003124_120 Hb_000816_200 Hb_000816_200 Hb_001677_220--Hb_000816_200 Hb_001832_200 Hb_001832_200 Hb_001105_040--Hb_001832_200 Hb_025194_050 Hb_025194_050 Hb_001105_040--Hb_025194_050 Hb_000128_060 Hb_000128_060 Hb_001105_040--Hb_000128_060 Hb_016219_010 Hb_016219_010 Hb_001105_040--Hb_016219_010 Hb_001105_040--Hb_008705_020 Hb_000438_140 Hb_000438_140 Hb_012506_070--Hb_000438_140 Hb_001109_050 Hb_001109_050 Hb_012506_070--Hb_001109_050 Hb_113853_010 Hb_113853_010 Hb_012506_070--Hb_113853_010 Hb_012506_070--Hb_134849_010 Hb_001277_030 Hb_001277_030 Hb_012506_070--Hb_001277_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.937 2.36643 5.52126 4.28944 1.82084 2.61197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07747 3.51297 0.603474 4.30788 10.3131

CAGE analysis