Hb_001832_200

Information

Type -
Description -
Location Contig1832: 217911-224326
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23820g
description POPTRDRAFT_832070; proteasome family protein
nr
ID XP_012076913.1
description PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q5JVF3
description PCI domain-containing protein 2 OS=Homo sapiens GN=PCID2 PE=1 SV=2
trembl
ID A0A067KC87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07397 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pci domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17911: 219531-219856 , PASA_asmbl_17912: 220010-222396 , PASA_asmbl_17914: 222409-223930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_200 0.0 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
2 Hb_001105_040 0.0615372227 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_001882_010 0.0810015027 - - -
4 Hb_025194_050 0.0811768449 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
5 Hb_010863_050 0.0849021106 - - OTU domain-containing protein 6B, putative [Ricinus communis]
6 Hb_000108_020 0.0859207163 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
7 Hb_068079_010 0.0890238448 - - -
8 Hb_008705_020 0.0890532353 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
9 Hb_006907_060 0.0897328229 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
10 Hb_001504_010 0.0912325018 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
11 Hb_000032_500 0.0913817454 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
12 Hb_000029_400 0.091668041 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
13 Hb_008304_020 0.0918489025 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
14 Hb_003355_010 0.0921770036 - - Heat shock 70 kDa protein, putative [Ricinus communis]
15 Hb_106890_010 0.093505668 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
16 Hb_134849_010 0.0948572371 - - ATP synthase subunit d, putative [Ricinus communis]
17 Hb_001623_500 0.0949756938 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
18 Hb_000243_120 0.0972259377 - - PREDICTED: MORC family CW-type zinc finger protein 3-like isoform X2 [Jatropha curcas]
19 Hb_000128_060 0.0974335508 - - PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis vinifera]
20 Hb_113853_010 0.0980064567 - - 50S ribosomal protein L2, putative [Ricinus communis]

Gene co-expression network

sample Hb_001832_200 Hb_001832_200 Hb_001105_040 Hb_001105_040 Hb_001832_200--Hb_001105_040 Hb_001882_010 Hb_001882_010 Hb_001832_200--Hb_001882_010 Hb_025194_050 Hb_025194_050 Hb_001832_200--Hb_025194_050 Hb_010863_050 Hb_010863_050 Hb_001832_200--Hb_010863_050 Hb_000108_020 Hb_000108_020 Hb_001832_200--Hb_000108_020 Hb_068079_010 Hb_068079_010 Hb_001832_200--Hb_068079_010 Hb_001105_040--Hb_025194_050 Hb_000032_500 Hb_000032_500 Hb_001105_040--Hb_000032_500 Hb_000128_060 Hb_000128_060 Hb_001105_040--Hb_000128_060 Hb_016219_010 Hb_016219_010 Hb_001105_040--Hb_016219_010 Hb_008705_020 Hb_008705_020 Hb_001105_040--Hb_008705_020 Hb_000163_260 Hb_000163_260 Hb_001882_010--Hb_000163_260 Hb_000291_180 Hb_000291_180 Hb_001882_010--Hb_000291_180 Hb_000029_400 Hb_000029_400 Hb_001882_010--Hb_000029_400 Hb_000007_090 Hb_000007_090 Hb_001882_010--Hb_000007_090 Hb_160271_010 Hb_160271_010 Hb_001882_010--Hb_160271_010 Hb_073973_090 Hb_073973_090 Hb_001882_010--Hb_073973_090 Hb_000617_250 Hb_000617_250 Hb_025194_050--Hb_000617_250 Hb_000270_480 Hb_000270_480 Hb_025194_050--Hb_000270_480 Hb_007012_030 Hb_007012_030 Hb_025194_050--Hb_007012_030 Hb_025194_050--Hb_068079_010 Hb_012150_030 Hb_012150_030 Hb_010863_050--Hb_012150_030 Hb_004452_120 Hb_004452_120 Hb_010863_050--Hb_004452_120 Hb_000304_070 Hb_000304_070 Hb_010863_050--Hb_000304_070 Hb_000212_230 Hb_000212_230 Hb_010863_050--Hb_000212_230 Hb_002675_250 Hb_002675_250 Hb_010863_050--Hb_002675_250 Hb_035273_020 Hb_035273_020 Hb_010863_050--Hb_035273_020 Hb_000108_020--Hb_068079_010 Hb_000085_070 Hb_000085_070 Hb_000108_020--Hb_000085_070 Hb_022693_130 Hb_022693_130 Hb_000108_020--Hb_022693_130 Hb_000108_020--Hb_160271_010 Hb_000645_180 Hb_000645_180 Hb_000108_020--Hb_000645_180 Hb_000480_040 Hb_000480_040 Hb_000108_020--Hb_000480_040 Hb_002828_060 Hb_002828_060 Hb_068079_010--Hb_002828_060 Hb_000862_100 Hb_000862_100 Hb_068079_010--Hb_000862_100 Hb_068079_010--Hb_022693_130 Hb_068079_010--Hb_000645_180 Hb_004705_160 Hb_004705_160 Hb_068079_010--Hb_004705_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92588 3.50168 9.83122 5.97276 3.10492 3.00441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.95379 3.76047 2.17123 5.84028 9.86438

CAGE analysis