Hb_000291_180

Information

Type -
Description -
Location Contig291: 145930-150129
Sequence    

Annotation

kegg
ID pmum:103332955
description chaperone protein dnaJ 20, chloroplastic
nr
ID XP_012078129.1
description PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
swissprot
ID B0S1F7
description Chaperone protein DnaJ OS=Finegoldia magna (strain ATCC 29328) GN=dnaJ PE=3 SV=1
trembl
ID A0A067K9H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12019 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30516: 145933-149903 , PASA_asmbl_30517: 149005-149117 , PASA_asmbl_30518: 150606-158103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_180 0.0 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
2 Hb_160271_010 0.0630556668 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
3 Hb_001882_010 0.0730021814 - - -
4 Hb_048093_010 0.0766844354 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
5 Hb_000108_020 0.0803144414 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
6 Hb_000680_010 0.0867174126 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
7 Hb_068079_010 0.0867690092 - - -
8 Hb_156850_100 0.0898522221 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
9 Hb_003883_010 0.0904607488 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
10 Hb_002631_240 0.0904830906 - - JHL17M24.3 [Jatropha curcas]
11 Hb_025194_050 0.0909701173 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
12 Hb_009476_130 0.0916256171 - - hypothetical protein VITISV_005430 [Vitis vinifera]
13 Hb_002218_020 0.0917917818 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
14 Hb_087313_010 0.0919209848 - - conserved hypothetical protein [Ricinus communis]
15 Hb_022693_130 0.092205678 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_113853_010 0.0927620681 - - 50S ribosomal protein L2, putative [Ricinus communis]
17 Hb_102948_010 0.092848987 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
18 Hb_000941_100 0.0928668587 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
19 Hb_009847_030 0.0929616645 - - zinc finger family protein [Populus trichocarpa]
20 Hb_000703_290 0.093293997 - - aldo/keto reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000291_180 Hb_000291_180 Hb_160271_010 Hb_160271_010 Hb_000291_180--Hb_160271_010 Hb_001882_010 Hb_001882_010 Hb_000291_180--Hb_001882_010 Hb_048093_010 Hb_048093_010 Hb_000291_180--Hb_048093_010 Hb_000108_020 Hb_000108_020 Hb_000291_180--Hb_000108_020 Hb_000680_010 Hb_000680_010 Hb_000291_180--Hb_000680_010 Hb_068079_010 Hb_068079_010 Hb_000291_180--Hb_068079_010 Hb_022693_130 Hb_022693_130 Hb_160271_010--Hb_022693_130 Hb_000320_190 Hb_000320_190 Hb_160271_010--Hb_000320_190 Hb_156850_100 Hb_156850_100 Hb_160271_010--Hb_156850_100 Hb_002107_050 Hb_002107_050 Hb_160271_010--Hb_002107_050 Hb_160271_010--Hb_000108_020 Hb_000163_260 Hb_000163_260 Hb_001882_010--Hb_000163_260 Hb_000029_400 Hb_000029_400 Hb_001882_010--Hb_000029_400 Hb_000007_090 Hb_000007_090 Hb_001882_010--Hb_000007_090 Hb_001882_010--Hb_160271_010 Hb_073973_090 Hb_073973_090 Hb_001882_010--Hb_073973_090 Hb_000941_100 Hb_000941_100 Hb_048093_010--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_048093_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_048093_010--Hb_012150_030 Hb_048093_010--Hb_156850_100 Hb_134849_010 Hb_134849_010 Hb_048093_010--Hb_134849_010 Hb_000108_020--Hb_068079_010 Hb_000085_070 Hb_000085_070 Hb_000108_020--Hb_000085_070 Hb_000108_020--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_000108_020--Hb_000645_180 Hb_000480_040 Hb_000480_040 Hb_000108_020--Hb_000480_040 Hb_003883_010 Hb_003883_010 Hb_000680_010--Hb_003883_010 Hb_000680_010--Hb_160271_010 Hb_002915_010 Hb_002915_010 Hb_000680_010--Hb_002915_010 Hb_000680_010--Hb_002107_050 Hb_000680_010--Hb_000320_190 Hb_002828_060 Hb_002828_060 Hb_068079_010--Hb_002828_060 Hb_000862_100 Hb_000862_100 Hb_068079_010--Hb_000862_100 Hb_068079_010--Hb_022693_130 Hb_068079_010--Hb_000645_180 Hb_004705_160 Hb_004705_160 Hb_068079_010--Hb_004705_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.27502 8.75783 19.2054 15.3675 5.36265 6.95298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.73659 7.02726 4.26703 5.67704 20.2737

CAGE analysis