Hb_000108_020

Information

Type -
Description -
Location Contig108: 25349-34601
Sequence    

Annotation

kegg
ID pop:POPTR_0019s02430g
description Phosphoribosylaminoimidazole carboxylase family protein
nr
ID XP_006370990.1
description hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
swissprot
ID P55195
description Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PURKE PE=2 SV=1
trembl
ID U5FH92
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s02430g PE=3 SV=1
Gene Ontology
ID GO:0004638
description phosphoribosylaminoimidazole chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02375: 25390-34503 , PASA_asmbl_02376: 32348-32576 , PASA_asmbl_02377: 33197-33310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_020 0.0 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
2 Hb_068079_010 0.0656104257 - - -
3 Hb_000085_070 0.0687771377 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
4 Hb_022693_130 0.0768826631 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_160271_010 0.077087745 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
6 Hb_000645_180 0.0783307757 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
7 Hb_000480_040 0.0790616678 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
8 Hb_000291_180 0.0803144414 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
9 Hb_025194_050 0.0832143456 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
10 Hb_001882_010 0.0842834575 - - -
11 Hb_000748_090 0.0848262588 - - glucose inhibited division protein A, putative [Ricinus communis]
12 Hb_001832_200 0.0859207163 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_007012_030 0.0868104373 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
14 Hb_048093_010 0.0874015459 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
15 Hb_000941_100 0.0881347313 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
16 Hb_002774_190 0.0884594508 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
17 Hb_114310_070 0.0886109184 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
18 Hb_009288_040 0.0910258129 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
19 Hb_000237_200 0.0919094399 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
20 Hb_002828_060 0.0926055558 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000108_020 Hb_000108_020 Hb_068079_010 Hb_068079_010 Hb_000108_020--Hb_068079_010 Hb_000085_070 Hb_000085_070 Hb_000108_020--Hb_000085_070 Hb_022693_130 Hb_022693_130 Hb_000108_020--Hb_022693_130 Hb_160271_010 Hb_160271_010 Hb_000108_020--Hb_160271_010 Hb_000645_180 Hb_000645_180 Hb_000108_020--Hb_000645_180 Hb_000480_040 Hb_000480_040 Hb_000108_020--Hb_000480_040 Hb_002828_060 Hb_002828_060 Hb_068079_010--Hb_002828_060 Hb_000862_100 Hb_000862_100 Hb_068079_010--Hb_000862_100 Hb_068079_010--Hb_022693_130 Hb_068079_010--Hb_000645_180 Hb_004705_160 Hb_004705_160 Hb_068079_010--Hb_004705_160 Hb_000309_020 Hb_000309_020 Hb_000085_070--Hb_000309_020 Hb_000085_070--Hb_000480_040 Hb_002542_160 Hb_002542_160 Hb_000085_070--Hb_002542_160 Hb_003355_010 Hb_003355_010 Hb_000085_070--Hb_003355_010 Hb_000220_210 Hb_000220_210 Hb_000085_070--Hb_000220_210 Hb_022693_130--Hb_160271_010 Hb_005062_060 Hb_005062_060 Hb_022693_130--Hb_005062_060 Hb_022693_130--Hb_000645_180 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250 Hb_000291_180 Hb_000291_180 Hb_160271_010--Hb_000291_180 Hb_000320_190 Hb_000320_190 Hb_160271_010--Hb_000320_190 Hb_156850_100 Hb_156850_100 Hb_160271_010--Hb_156850_100 Hb_002107_050 Hb_002107_050 Hb_160271_010--Hb_002107_050 Hb_012779_080 Hb_012779_080 Hb_000645_180--Hb_012779_080 Hb_070624_010 Hb_070624_010 Hb_000645_180--Hb_070624_010 Hb_000645_180--Hb_000320_190 Hb_000480_040--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000480_040--Hb_011861_050 Hb_000941_100 Hb_000941_100 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.94672 4.42104 12.8064 8.9102 3.60126 5.5832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.14828 4.00736 2.75972 5.60484 15.4997

CAGE analysis