Hb_002542_160

Information

Type -
Description -
Location Contig2542: 167275-173210
Sequence    

Annotation

kegg
ID gmx:100777225
description peptide chain release factor 1-like
nr
ID XP_012082693.1
description PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
swissprot
ID Q8RX79
description Peptide chain release factor APG3, chloroplastic OS=Arabidopsis thaliana GN=APG3 PE=2 SV=1
trembl
ID A0A067JW24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13873 PE=3 SV=1
Gene Ontology
ID GO:0009507
description peptide chain release factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26583: 167520-172052 , PASA_asmbl_26584: 167246-173115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002542_160 0.0 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
2 Hb_000220_210 0.0412670961 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
3 Hb_000309_020 0.0558405396 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
4 Hb_000345_370 0.0644099341 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
5 Hb_000085_070 0.071305257 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
6 Hb_016461_030 0.076460601 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000032_500 0.0817391096 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
8 Hb_000144_060 0.0823509881 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001427_040 0.0829712649 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
10 Hb_002282_070 0.0855619595 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
11 Hb_000480_040 0.086785664 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
12 Hb_033312_010 0.0889452486 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000941_100 0.0898414332 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
14 Hb_001195_770 0.0982479059 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
15 Hb_004884_180 0.1002897646 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
16 Hb_001472_160 0.1008565557 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
17 Hb_001438_010 0.1013671887 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
18 Hb_003029_020 0.102484652 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
19 Hb_000613_120 0.1026530017 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
20 Hb_000200_010 0.1032443456 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_002542_160 Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_002542_160--Hb_000220_210 Hb_000309_020 Hb_000309_020 Hb_002542_160--Hb_000309_020 Hb_000345_370 Hb_000345_370 Hb_002542_160--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_002542_160--Hb_000085_070 Hb_016461_030 Hb_016461_030 Hb_002542_160--Hb_016461_030 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_000220_210--Hb_000309_020 Hb_000220_210--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_000220_210--Hb_001427_040 Hb_001472_160 Hb_001472_160 Hb_000220_210--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000220_210--Hb_004884_180 Hb_000480_040 Hb_000480_040 Hb_000309_020--Hb_000480_040 Hb_000309_020--Hb_000345_370 Hb_000309_020--Hb_000085_070 Hb_000144_060 Hb_000144_060 Hb_000309_020--Hb_000144_060 Hb_000345_370--Hb_000144_060 Hb_002282_070 Hb_002282_070 Hb_000345_370--Hb_002282_070 Hb_000345_370--Hb_016461_030 Hb_000108_020 Hb_000108_020 Hb_000085_070--Hb_000108_020 Hb_000085_070--Hb_000480_040 Hb_003355_010 Hb_003355_010 Hb_000085_070--Hb_003355_010 Hb_000085_070--Hb_000220_210 Hb_016461_030--Hb_002282_070 Hb_000816_200 Hb_000816_200 Hb_016461_030--Hb_000816_200 Hb_003777_020 Hb_003777_020 Hb_016461_030--Hb_003777_020 Hb_016461_030--Hb_001427_040 Hb_134849_010 Hb_134849_010 Hb_000032_500--Hb_134849_010 Hb_001677_220 Hb_001677_220 Hb_000032_500--Hb_001677_220 Hb_001105_040 Hb_001105_040 Hb_000032_500--Hb_001105_040 Hb_000941_100 Hb_000941_100 Hb_000032_500--Hb_000941_100 Hb_000200_010 Hb_000200_010 Hb_000032_500--Hb_000200_010 Hb_008705_020 Hb_008705_020 Hb_000032_500--Hb_008705_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36907 2.4764 7.92508 3.9298 3.67869 3.02216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.66975 3.3968 1.88321 4.17946 13.7475

CAGE analysis