Hb_000480_040

Information

Type -
Description -
Location Contig480: 56809-63493
Sequence    

Annotation

kegg
ID rcu:RCOM_0724730
description muconate cycloisomerase, putative (EC:5.5.1.1)
nr
ID XP_012075449.1
description PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
swissprot
ID B9I2J6
description L-Ala-D/L-amino acid epimerase OS=Populus trichocarpa GN=POPTR_0012s05040g PE=3 SV=2
trembl
ID B9SFX6
description Muconate cycloisomerase, putative OS=Ricinus communis GN=RCOM_0724730 PE=4 SV=1
Gene Ontology
ID GO:0000287
description l-ala-d l-amino acid epimerase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44676: 57208-61710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000480_040 0.0 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
2 Hb_000309_020 0.0585804822 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
3 Hb_011861_050 0.0669674321 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
4 Hb_000085_070 0.070120588 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000941_100 0.0762723981 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
6 Hb_001195_770 0.0781303898 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
7 Hb_000108_020 0.0790616678 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
8 Hb_002542_160 0.086785664 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
9 Hb_000816_200 0.0880298044 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
10 Hb_000388_150 0.0890213437 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
11 Hb_029920_030 0.0912194138 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
12 Hb_016461_030 0.0914606657 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_008705_020 0.0922609008 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
14 Hb_005276_010 0.0940084833 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
15 Hb_000144_060 0.0940721388 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000613_120 0.0943620609 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
17 Hb_001438_010 0.0954008572 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
18 Hb_048093_010 0.0979339861 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
19 Hb_156850_100 0.0996630712 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
20 Hb_189003_060 0.0999248511 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000480_040 Hb_000480_040 Hb_000309_020 Hb_000309_020 Hb_000480_040--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000480_040--Hb_011861_050 Hb_000085_070 Hb_000085_070 Hb_000480_040--Hb_000085_070 Hb_000941_100 Hb_000941_100 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_000108_020 Hb_000108_020 Hb_000480_040--Hb_000108_020 Hb_002542_160 Hb_002542_160 Hb_000309_020--Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_000309_020--Hb_000220_210 Hb_000345_370 Hb_000345_370 Hb_000309_020--Hb_000345_370 Hb_000309_020--Hb_000085_070 Hb_000144_060 Hb_000144_060 Hb_000309_020--Hb_000144_060 Hb_011861_050--Hb_000144_060 Hb_011861_050--Hb_000345_370 Hb_011861_050--Hb_000309_020 Hb_011861_050--Hb_000941_100 Hb_005147_080 Hb_005147_080 Hb_011861_050--Hb_005147_080 Hb_000085_070--Hb_000108_020 Hb_000085_070--Hb_002542_160 Hb_003355_010 Hb_003355_010 Hb_000085_070--Hb_003355_010 Hb_000085_070--Hb_000220_210 Hb_003053_110 Hb_003053_110 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_000941_100--Hb_001195_770 Hb_012150_030 Hb_012150_030 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_008705_020 Hb_008705_020 Hb_001195_770--Hb_008705_020 Hb_001195_770--Hb_003053_110 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_001195_770--Hb_006907_060 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110 Hb_068079_010 Hb_068079_010 Hb_000108_020--Hb_068079_010 Hb_022693_130 Hb_022693_130 Hb_000108_020--Hb_022693_130 Hb_160271_010 Hb_160271_010 Hb_000108_020--Hb_160271_010 Hb_000645_180 Hb_000645_180 Hb_000108_020--Hb_000645_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.77173 3.5801 14.3917 8.57702 4.42727 5.42207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.34149 3.84823 4.84113 5.14294 20.9221

CAGE analysis