Hb_005147_080

Information

Type -
Description -
Location Contig5147: 71771-85486
Sequence    

Annotation

kegg
ID rcu:RCOM_0758520
description All-trans-retinol 13,14-reductase precursor, putative (EC:1.3.99.23)
nr
ID XP_012066689.1
description PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q2VEX9
description Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO PE=2 SV=1
trembl
ID A0A067L5E5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00255 PE=4 SV=1
Gene Ontology
ID GO:0009507
description prolycopene chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46473: 71786-75795 , PASA_asmbl_46477: 85142-85431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005147_080 0.0 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_002290_030 0.0786559305 - - PREDICTED: uncharacterized protein LOC105635877 isoform X1 [Jatropha curcas]
3 Hb_004375_050 0.0807545269 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_010344_020 0.084490401 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
5 Hb_011861_050 0.0880282286 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
6 Hb_189003_060 0.0881547474 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000318_130 0.1023308518 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_005276_010 0.1040540476 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
9 Hb_002660_190 0.1062187954 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
10 Hb_001195_770 0.1063974791 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
11 Hb_000480_040 0.1065193764 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
12 Hb_002075_030 0.1068049392 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
13 Hb_001438_010 0.108774663 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
14 Hb_003029_020 0.1119360331 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
15 Hb_010128_020 0.1167320444 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
16 Hb_000816_200 0.1185636272 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
17 Hb_000941_100 0.1193125368 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
18 Hb_001946_160 0.1197625371 - - putative chaperon P13.9 [Castanea sativa]
19 Hb_000976_190 0.1198354931 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
20 Hb_029920_030 0.1207006779 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_005147_080 Hb_005147_080 Hb_002290_030 Hb_002290_030 Hb_005147_080--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_005147_080--Hb_004375_050 Hb_010344_020 Hb_010344_020 Hb_005147_080--Hb_010344_020 Hb_011861_050 Hb_011861_050 Hb_005147_080--Hb_011861_050 Hb_189003_060 Hb_189003_060 Hb_005147_080--Hb_189003_060 Hb_000318_130 Hb_000318_130 Hb_005147_080--Hb_000318_130 Hb_002290_030--Hb_004375_050 Hb_001629_090 Hb_001629_090 Hb_002290_030--Hb_001629_090 Hb_000983_070 Hb_000983_070 Hb_002290_030--Hb_000983_070 Hb_002290_030--Hb_000318_130 Hb_003029_020 Hb_003029_020 Hb_002290_030--Hb_003029_020 Hb_004375_050--Hb_001629_090 Hb_000340_150 Hb_000340_150 Hb_004375_050--Hb_000340_150 Hb_004375_050--Hb_000318_130 Hb_001195_770 Hb_001195_770 Hb_004375_050--Hb_001195_770 Hb_138585_030 Hb_138585_030 Hb_010344_020--Hb_138585_030 Hb_010344_020--Hb_011861_050 Hb_002915_010 Hb_002915_010 Hb_010344_020--Hb_002915_010 Hb_000208_190 Hb_000208_190 Hb_010344_020--Hb_000208_190 Hb_000094_100 Hb_000094_100 Hb_010344_020--Hb_000094_100 Hb_000480_040 Hb_000480_040 Hb_011861_050--Hb_000480_040 Hb_000144_060 Hb_000144_060 Hb_011861_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_011861_050--Hb_000345_370 Hb_000309_020 Hb_000309_020 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_000473_050 Hb_000473_050 Hb_189003_060--Hb_000473_050 Hb_002075_030 Hb_002075_030 Hb_189003_060--Hb_002075_030 Hb_001959_060 Hb_001959_060 Hb_189003_060--Hb_001959_060 Hb_000684_430 Hb_000684_430 Hb_189003_060--Hb_000684_430 Hb_189003_060--Hb_000480_040 Hb_003941_030 Hb_003941_030 Hb_000318_130--Hb_003941_030 Hb_001138_060 Hb_001138_060 Hb_000318_130--Hb_001138_060 Hb_002660_190 Hb_002660_190 Hb_000318_130--Hb_002660_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.36913 8.87415 30.2481 12.2175 6.42205 8.95936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.89524 11.6214 14.2937 7.09346 46.0818

CAGE analysis